Gene detail information of Glyur000058s00006130 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27080.2 | 7.00E-70 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | XP_003617084.1 | 1.78E-117 | Avr9/Cf-9 rapidly elicited protein [Medicago truncatula] |
| Swissprot | tr|Q9SJ52|YLS9_ARATH | 2.00E-20 | Protein YLS9 |
| trEMBL | tr|G7K2X8|G7K2X8_MEDTR | 7.00E-118 | Late embryogenesis abundant hydroxyproline-rich glycoprotein {ECO:0000313|EMBL:AET00043.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 48095 | 48880 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006130.1 | PF03168.8 | LEA_2 | 134 | 236 | 1.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.100 |
| SRR1783600 | control | 10.538 |
| SRR1783602 | moderate drought stress | 4.780 |
| SRR1811619 | moderate drought stress | 4.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 409.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 398.819 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.397 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.606 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 639.965 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 634.021 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 115.319 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 115.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.042 |
| SRR2868004 | Drought Stress (root) | 51.355 |
| SRR2967015 | Control (root) | 307.427 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 555.807 |
| SRR9715740 | Leaf | 357.436 |
| SRR9715741 | Leaf | 409.219 |
| SRR9715739 | Root | 2098.680 |
| SRR9715742 | Root | 1451.337 |
| SRR9715743 | Root | 1508.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 729.564 |
| SRR8749028 | MeJA induced 9h | 915.289 |
| SRR8749029 | MeJA induced 9h | 667.495 |
| SRR8749030 | Uninduced | 789.699 |
| SRR8749031 | Uninduced | 173.492 |
| SRR8749032 | Uninduced | 493.457 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 48.344 |
| SRR8400027 | Control - Root | 137.693 |