Gene detail information of Glyur000058s00006129 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27080.2 | 9.00E-29 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | AII99861.1 | 2.23E-51 | late embryogenesis abundant protein [Cicer arietinum] |
| trEMBL | tr|A0A076KWH6|A0A076KWH6_CICAR | 8.00E-52 | Late embryogenesis abundant protein {ECO:0000313|EMBL:AII99861.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 43505 | 43828 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006129.1 | PF03168.8 | LEA_2 | 2 | 82 | 2.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.189 |
| SRR1783600 | control | 4.190 |
| SRR1783602 | moderate drought stress | 1.496 |
| SRR1811619 | moderate drought stress | 1.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 283.808 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 276.535 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.978 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 31.045 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 545.732 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 548.131 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 83.308 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 82.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.730 |
| SRR2868004 | Drought Stress (root) | 29.741 |
| SRR2967015 | Control (root) | 169.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 317.122 |
| SRR9715740 | Leaf | 197.319 |
| SRR9715741 | Leaf | 220.426 |
| SRR9715739 | Root | 903.054 |
| SRR9715742 | Root | 663.909 |
| SRR9715743 | Root | 690.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 352.334 |
| SRR8749028 | MeJA induced 9h | 413.832 |
| SRR8749029 | MeJA induced 9h | 462.211 |
| SRR8749030 | Uninduced | 621.817 |
| SRR8749031 | Uninduced | 162.128 |
| SRR8749032 | Uninduced | 337.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.705 |
| SRR8400027 | Control - Root | 58.208 |