Gene detail information of Glyur000058s00006126 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G21140.1 | 2.00E-87 | embryo defective 1379 |
| NR | XP_004501976.1 | 0 | PREDICTED: uncharacterized protein LOC101512852 isoform X1 [Cicer arietinum] |
| trEMBL | tr|K7N1S4|K7N1S4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G12400.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00058 | 19734 | 26045 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000058s00006126.1 | PF07574.8 | SMC_Nse1 | 7 | 191 | 6.90E-34 |
| Glyur000058s00006126.1 | PF08746.6 | zf-RING-like | 203 | 246 | 2.30E-08 |
| Glyur000058s00006126.2 | PF07574.8 | SMC_Nse1 | 7 | 191 | 6.90E-34 |
| Glyur000058s00006126.2 | PF08746.6 | zf-RING-like | 203 | 246 | 2.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.959 |
| SRR1783600 | control | 3.059 |
| SRR1783602 | moderate drought stress | 2.563 |
| SRR1811619 | moderate drought stress | 2.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.735 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.948 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.684 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.703 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.714 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.783 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.600 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.231 |
| SRR2868004 | Drought Stress (root) | 5.222 |
| SRR2967015 | Control (root) | 6.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.977 |
| SRR9715740 | Leaf | 0.843 |
| SRR9715741 | Leaf | 1.238 |
| SRR9715739 | Root | 1.114 |
| SRR9715742 | Root | 2.195 |
| SRR9715743 | Root | 1.889 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.616 |
| SRR8749028 | MeJA induced 9h | 7.803 |
| SRR8749029 | MeJA induced 9h | 4.887 |
| SRR8749030 | Uninduced | 3.012 |
| SRR8749031 | Uninduced | 1.203 |
| SRR8749032 | Uninduced | 1.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.664 |
| SRR8400027 | Control - Root | 8.089 |