Gene detail information of Glyur000057s00009024 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01470.3 | 1.00E-49 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
| NR | NP_001240865.1 | 1.04E-74 | uncharacterized protein LOC100803961 [Glycine max] |
| trEMBL | tr|C6TP10|C6TP10_SOYBN | 4.00E-75 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G07900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00057 | 423554 | 427989 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000057s00009024.1 | PF10294.4 | Methyltransf_16 | 4 | 116 | 9.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.423 |
| SRR1783600 | control | 13.468 |
| SRR1783602 | moderate drought stress | 15.923 |
| SRR1811619 | moderate drought stress | 14.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.930 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.187 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.152 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.086 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.636 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.823 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.558 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.791 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.010 |
| SRR2868004 | Drought Stress (root) | 29.066 |
| SRR2967015 | Control (root) | 26.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.696 |
| SRR9715740 | Leaf | 12.550 |
| SRR9715741 | Leaf | 8.904 |
| SRR9715739 | Root | 2.037 |
| SRR9715742 | Root | 3.405 |
| SRR9715743 | Root | 4.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.251 |
| SRR8749028 | MeJA induced 9h | 21.621 |
| SRR8749029 | MeJA induced 9h | 21.255 |
| SRR8749030 | Uninduced | 12.779 |
| SRR8749031 | Uninduced | 8.486 |
| SRR8749032 | Uninduced | 7.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.060 |
| SRR8400027 | Control - Root | 20.539 |