Gene detail

Gene detail information of Glyur000057s00008996

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	0	NB-ARC domain-containing disease resistance protein
NR	XP_004511027.1	0	PREDICTED: putative disease resistance protein At3g14460-like [Cicer arietinum]
COG	YP_005082071.1	1.00E-13	outermembrane protein [Pseudovibrio sp. FO-BEG1]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|V5TGI4\|V5TGI4_CICAR	0	NBS-LRR protein {ECO:0000313\|EMBL:AHB64359.1}

Sequence

Transcript Sequence

>Glyur000057s00008996.1
ATGGCGGCTGAATTCATTGGTAGTGCTCTTCTTTCTGCTTCTCTTCAGGTGGCATTTGACAGGCTGGCTTCTACTGAAACTTTGGACTACTTTAAAGGANGAGAACTCGATGAGAAGCTGCTGAACAAGCTGAACATCATGCTGCTATCCATCAATGCTGTGGTTGATGATGCAGAACAAAAGCAGATCAGGAATCGTCATGTGAAAGCATGGCTCGATGCTGTCAAACATGCTGTTTTTGATGCAGAGGATCTGTTGGATGAAATTGACACTCAAGTCTCCCAATACAAGCTGGAAACTGAATCTCAGTCCAGTACTGGCAAGGTATGGAATCTCTTCAATGCTTTTGTGAGTTCATTTGACAAGGGAATTGAATCTAGGATGCAAGAAATCCTNGACCGCCTAGAGTATCTTGCAAGCAGAAAGGATATTCTAGGTTTGAAAGAGGCTAGTGGTTTTGGTGTTAGATCTGAAAGTCAAGTNTCACAGAAACTGCCAACAACATCTTTGCTTGGTGAAACAGTTATATATGGTAGAGATGTTGACAAAGAAATTATCTTTAATTGGCTAATATCTCACACTGAAAATGATAAACTGCTATCAGTTATTTCCATAGTGGGGATGGGCGGGATGGGTAAGACGTCACTTGCCCAATACTTATACAATGACTCAAGGATGGAGTATGAATTTGATATCAAAGCTTGGGTTTGTATTTCGGACGAATTTGATGTTTTTAAGGTAACAAGAGCGATTCTTGAGGCCATCACCAGATCAACCGANGATAGTAGAGACCTAAATATGGTTCAAGGAAGATTGAAGGAAAAATTGTCAGGGAAGAGATTTCTTCTTGTTTTGGATGATGTTTGGAACGAAAGCCATATGCAGTGGGAAACTTTGCAGACTCCTTTTAACTATGGGACTCAGGGAAGCAAAATTCTTGTCACTACACGCAGTATGAAGGTGGCTTCGACCATGCGATCAGCTAAAATACATCAGCTAGANCAATTAAAAGAAGAACATTGCTGGNTGTTATTTGCTAGACATGCATTCCAAGANGAAAATCCTCAATTGAATCCTGAGTTGAAGGAGATTGGTATGAAGATAGTTGGAAAATGCAAAGGATTGCCTCTAGCCTTGAAAACAATTGGAAGCCTCTTATACACAAAATCATTCATTCTGGAATGGAAAAATGTTTTGACAAGCNAGATATGGGACTTCCCAGAAGAGGATAGCAATATTATCCCCGCTTTAAGACTGAGCTATCACCACCTTCCTTCTCATCTCAAGAGATGCTTTGCTTATTGTTCCTTATTCCCCAAAGATTATGTGTTTGAAAAGGAGGATTTAATTTTATTATGGATGGCTGAGAATTTTCTACAATGTCCTCAACAGAGTAAGAGTATGGAAGAAGTTGGTGAACAGTACTTTGATGATCTGTTATCAAGGTCTTTCTTTCAACAATCAGGGGCAGACAAAATGTGTTTTGTCATGCATGACCTACTCAATGATTTGGCAAAGTATGTATGCGGGGATTTTTGTTTCAGGTTGGAAGTTGAAGATGCACAAAATATATCAAAAATGACTCGTCATTTTTCGTTTTTAAGAAATAAGTATGAATCATCTAAAAGGTTTGAGGCCTTACGCAANGCTGAAAAATTGCGTGCATTTCTACCATTGAGTAGAAACCCCAAAGTATTTTTTCATGATCAATTTTGGTTGTCTGGCACATTGGTTCATGACTTGCTGATGTCTGCCACATTGGTGCATGACTTGCTCTCCAATTTTAAGCGCTTGCGTGTTTTATCTTTGTCCGGTTATTCCTTTGTAACTGAGGTGCCTGAAACTATAGGCAATCTTAAACATCTTCGTTATCTAGACCTTTCTGGTACCAACATAGCAAAGCTACCTGAGTCAACATGTTTGCTCTTTAACTTGCAAATACTCAAGTTGAAGAATTGTGGATCTCTGAAGGTGCTGCCTTTGAATTTTCATAAGCTCACTAATTTGCGTTATCTTGATTTTAGTGGAACTAAGGTGAGAAAGATGCCAGTGCATTTTGGAAAGTTGAAGAATCTTCAAGTTTTGAATTCATTCTGTGTGGGAAAAGATAGTGAGTGCAATATTCAACAGTTAGGTGAGCTCAATCTTCATGGAACACTATCAATTTCAGAGTTGCAGAATACTNTCAACCCCTTTGATGCATTAGCAGCAAATTTGAAAAATAAAGTACACCTTGTGAAGCTAGAGTTAGAATGGAATGTAAACGATGATGGTTCCCAGAAAGAAAGGGAAGTGCTTGACAAGTTACAACCTTCCAAACANTTGAAGGAGTTGTTAATCAGGAACTATGGCAGTACACGATTTCCAGATTGGTTTGGAGACAATTCATTATCCAATATAGTGTCCCTAGAATTGAACAAGTGTAAACATTGTGTGTTGTTGCCTCCACTTGGAATTTTGCAATCTCTCAAGAGACTGTGGATTACTGGGCTTGATGGGATAGTGGTTATTGGTGGTGAGTTTTATGGGAGTAGCTCTTCTTCTACTGTTTCATTTGCATCCTTGGAAACCTTAATCATGGAGGATATGGAAGAATGGGAAGAATGGGAATGTAAAACTGTGAAGGGTGCTTTTCCACGTCTTCGAAAGCTTTCTATAAAAAATTGTCNGAAGCTAAAACAGCATTTGCCAGATCAACTTCCCTGTCTAATGACACTGGAAATTTCTAATTGTGAACAGCTAGTGGCTTCTGTTCCCTGGAGTCCAGCCATTCATGAATTATATCTAGATGATTGTGGAAAGCTGCAATTTGATTATCATCCTTCTACTTTGAAAATCCTCAAGATTGGTGGATGCAGCATGGAAGGATCATTCCTTGAGAGGACTGAGCAGACCATATCTGATATCTCTCTTGAAAGAATGGAAATTATTGATTGCCCCAATATGAATATTCCCCTNTGCTGTTGCTTCAATTTTCTTGTAACATTGAAAATCAAGAGTAGCTGTGACTCCCTAACTACCTTTCCTCTGGATTTCTTCCCAAAACTATGTGAGCTCCGTTTAGAAGGCTGTAGTAATCTTGAGATGATTTCACAGAGGCAAGATCATCACAATCTCAAATTTTTGGTAATTACCCAGTGCCTTAAATTTGTATCATTTCCCAGAGGAGGATTCTCTGCACCGGGGCTAGTGTCTTGTCACATTGATAAATTAGAGAACTTAAAATCATTGCCTGAATGCATGCACATCCTCCTTCCATCTCTTTATCAGCTAGTTATAAAGGATTGTCCACAACTGGAGTNGTTCTCTGAAGGAGGTTTGCCATCAAACCTAAAACAACTTTATCTCCGGAATTGCTCCAAATTTATGGCCTCGCTGAAATGGGCTTTGNCAACCACCACCTCTCTACTTTCTTTGTATATTGGAGAAGTGGACATGGACATGGAGTCTTTTCCTGATCAAGGGTTGCTGCCACATTCTCTTACTTCTCTATCCATCACTTGGTGTCCAAATCTTGAAAAACTGGATTACATGGGTCTCTGTCACCTCACCTCTCTTACAAGATTGTATCTTTCCAACTGCCCCAGACTCCAATGCTTACCAGAGGAGGGTCTTCCCAAATCGATTTCTACTCTACAAATTTGGGGCAACTGTCCGCGCAGACGCCAATTCTCGTATTCTTTACCAGTTTATCAGGAGGAAGAGGATGGCTCAACCTACACAGATGAAATGACTTTGAACAATATTCTATCAAGTTCCATGTATGTTTTTGTGAGGAGCTGGACACCGGAAAATGGTTAAGTGCAATAGTTGTGGCATTCATTCCATGAAAAATA

Protein Sequence

>Glyur000057s00008996.1
MAAEFIGSALLSASLQVAFDRLASTETLDYFKGXELDEKLLNKLNIMLLSINAVVDDAEQKQIRNRHVKAWLDAVKHAVFDAEDLLDEIDTQVSQYKLETESQSSTGKVWNLFNAFVSSFDKGIESRMQEILDRLEYLASRKDILGLKEASGFGVRSESQVSQKLPTTSLLGETVIYGRDVDKEIIFNWLISHTENDKLLSVISIVGMGGMGKTSLAQYLYNDSRMEYEFDIKAWVCISDEFDVFKVTRAILEAITRSTXDSRDLNMVQGRLKEKLSGKRFLLVLDDVWNESHMQWETLQTPFNYGTQGSKILVTTRSMKVASTMRSAKIHQLXQLKEEHCWXLFARHAFQXENPQLNPELKEIGMKIVGKCKGLPLALKTIGSLLYTKSFILEWKNVLTSXIWDFPEEDSNIIPALRLSYHHLPSHLKRCFAYCSLFPKDYVFEKEDLILLWMAENFLQCPQQSKSMEEVGEQYFDDLLSRSFFQQSGADKMCFVMHDLLNDLAKYVCGDFCFRLEVEDAQNISKMTRHFSFLRNKYESSKRFEALRXAEKLRAFLPLSRNPKVFFHDQFWLSGTLVHDLLMSATLVHDLLSNFKRLRVLSLSGYSFVTEVPETIGNLKHLRYLDLSGTNIAKLPESTCLLFNLQILKLKNCGSLKVLPLNFHKLTNLRYLDFSGTKVRKMPVHFGKLKNLQVLNSFCVGKDSECNIQQLGELNLHGTLSISELQNTXNPFDALAANLKNKVHLVKLELEWNVNDDGSQKEREVLDKLQPSKXLKELLIRNYGSTRFPDWFGDNSLSNIVSLELNKCKHCVLLPPLGILQSLKRLWITGLDGIVVIGGEFYGSSSSSTVSFASLETLIMEDMEEWEEWECKTVKGAFPRLRKLSIKNCXKLKQHLPDQLPCLMTLEISNCEQLVASVPWSPAIHELYLDDCGKLQFDYHPSTLKILKIGGCSMEGSFLERTEQTISDISLERMEIIDCPNMNIPLCCCFNFLVTLKIKSSCDSLTTFPLDFFPKLCELRLEGCSNLEMISQRQDHHNLKFLVITQCLKFVSFPRGGFSAPGLVSCHIDKLENLKSLPECMHILLPSLYQLVIKDCPQLEXFSEGGLPSNLKQLYLRNCSKFMASLKWALXTTTSLLSLYIGEVDMDMESFPDQGLLPHSLTSLSITWCPNLEKLDYMGLCHLTSLTRLYLSNCPRLQCLPEEGLPKSISTLQIWGNCPRRRQFSYSLPVYQEEEDGSTYTDEMTLNNILSSSMYVFVRSWTPENG

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00057	245094	249385	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000057s00008996.1	PF00931.17	NB-ARC	183	460	3.80E-83
Glyur000057s00008996.1	PF12799.2	LRR_4	596	636	2.70E-07
Glyur000057s00008996.1	PF00560.28	LRR_1	1185	1205	0.081
Glyur000057s00008996.2	PF00931.17	NB-ARC	183	460	3.70E-83
Glyur000057s00008996.2	PF12799.2	LRR_4	596	636	2.70E-07
Glyur000057s00008996.2	PF00560.28	LRR_1	1185	1205	0.081

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.654
SRR1783600	control	2.711
SRR1783602	moderate drought stress	2.964
SRR1811619	moderate drought stress	3.046

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.510
DRR006520	Root Summer glycyrrhizin high producing strain	1.599
DRR006521	Root Winter glycyrrhizin high producing strain	2.071
DRR006522	Root Winter glycyrrhizin high producing strain	2.024
DRR006523	Root Summer glycyrrhizin low producing strain	1.262
DRR006524	Root Summer glycyrrhizin low producing strain	1.213
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.983
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.959

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.611
SRR2868004	Drought Stress (root)	4.200
SRR2967015	Control (root)	4.210

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.585
SRR9715740	Leaf	0.539
SRR9715741	Leaf	0.397
SRR9715739	Root	0.131
SRR9715742	Root	1.306
SRR9715743	Root	1.001

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.866
SRR8749028	MeJA induced 9h	1.241
SRR8749029	MeJA induced 9h	0.245
SRR8749030	Uninduced	0.276
SRR8749031	Uninduced	0.193
SRR8749032	Uninduced	0.092

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.282
SRR8400027	Control - Root	5.604