Gene detail

Gene detail information of Glyur000057s00008991

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G40030.1	0	nuclear RNA polymerase D1B
NR	AET02314.2	0	DNA-directed RNA polymerase [Medicago truncatula]
COG	YP_003816612.1	5.00E-50	DNA-directed RNA polymerase subunit A [Acidilobus saccharovorans 345-15]
Swissprot	tr\|Q5D869\|NRPE1_ARATH	0	DNA-directed RNA polymerase V subunit 1
trEMBL	tr\|G7LG09\|G7LG09_MEDTR	0	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}

Sequence

Transcript Sequence

>Glyur000057s00008991.1
CACTGTAGATTTACCCAGGAAGCGATGGAAGATAATCCTCCTTCAAGTGTTTTAGATGGGAAGGTTGTTGGGATCCGATTTAGTATGGCTACACGCCAGGAAATTTCTACAGCCTCCATTAGCGACTCATCAATTAGTCATGCCAGTCAGCTGTCAAATCCATTCCTTGGGCTGCCCCTAGAATTTGGCAGATGTGAATCTTGTGGTACTTCTGAAGCAGGAAAATGTGAAGGTCACTTTGGATATATTGAGCTTCCAGTTCCAATATATCATCCTAGTCATGTTAGTGAGTTGAAGCGAATACTGAGCCTGGTCTGCTTAAACTGCTTAAAAATGAAGAAAACTAAGTTTCCAGCTTCAAGCAGTGGTTTGGCACAGAGATTATTATCTCCCTGTTGTGAGGAGGTTAATGCCGCACAAGTTTCTATTAGGGAGGTCAAAACAGCTGATGGGGCTTGTTACTTGGCACTGAAGGTGCCTAAGTCAAAGATGCAGGATGGTTTTTGGAGTTTTTTAGAAAAATATGGCTATCGCTATGGGGTTGATCATACTCGAGCTTTGCTTCCTTGTGAGCATGTGGTTCTAATGGAGGAATTGGCAAAGGAGCTGGACTGGGTGATGGAAATTATCAAGAGATTTCCTCAAGAGACAAAAAAAAAGCTTGCTGGAAAAGGATATTTTCCTCAAGATGGGTANGTTTTGAAATTTCTTCCTGTACCACCGAATTGCTTGTCTGTACCAGCAGTTTCAGATGGCGTCAGTGTCATGTCTTCGGATCCTTCCATGACGATTCTCAGAAAGTTGCTCAGGAAAGTTGAAATCATCAAAAGTTCTAGATCAGGTGAACCAAACTTCGAGTCTCATCAAGTCGAAGCGAATGACTTGCAGTCTGTGTTTGATCAGTATCTTCAAGTTAGGGGTACTGCTAAGGCAGCACGTGATATAGAAACACGATTTGGGGTCAATAAAGAGCTAAATGATTCATCAACAAAAGCTTGGCTTGAGAAAATGCGGACTTTATTTATAAGAAAGGGTTCGGGGTTTTCTTCCCGGAATGTGATAACTGGAGATGGTTATAAGAGGATCAATGAAGTAGGAATTCCCCTTGAGGTTGCCCAGAGGATAACATTTGAGGAGAGAGTTAATACACATAACATGAGCTATTTACAAAAGTTAGTTGATGAAAATTTGTGCTTGGCCTACAAGGAAGGTGTGTCAACTTATTCGTTAAGGGAGGGTTCAAAGGGGCACACATATCTTAAGCCTGGGCAGATTGTGCATCGGAGGATTATGGATGGTGATATTGTCTTCATTAATAGACCACCTACAACGCACAAACACTCATTACAAGCACTTGTGGTGTACATCCATGATGACCACACCGTGAAAATAAATCCTCTAATTTGTGCACCCCTTGGNGCTGATTTTGATGGTGACTGTGTCCATCTATTTTATCCACAGTCACTTGCTGCTAAAGCTGAGGTTGTGGAGCTATTCTCTGTGGAGAAACAGCTTCTTAGCTCTCACAGTGGTAATCTGAATCTTCAGTTAACCACAGATTCGTTATTGTCACTCAAGATGTTAGTCAAGAGGTGTTTCTTGGATAGAGCGGCAGCAAATCAATTGGGAATGTTTCTTTCAATGCCTTTGCCACAGCCTGCTTTGCTCAAGGCCAGTTCTGGTGATTCTTACTGGACTTCCATTCAAATGCTGCATTGTGCGTTGCCTTTGTCATTTGATTGTACTGGGGAACACTACTTAATTAGGCAGAGTGAAATCTTAGAGTTTGATTTCAATAGAGATCTTCTGCCTGCGATAATAAATGACATAGCGGCCTCAATTTTTTTTGGGAAGGGTCCGCAGGAGGCCCTAAATTTCTTCGATGTACTACAGCCCTTTTTGATGGAAAGCATATTTGCCCATGGATTTAGTGTTGGATTACAAGAATTTTCAATATCCAGGGCAGTGAAAAGGGTTCTAAATAGAGACATNGGGAAAGTTTCTCCTTTGTTGTGTCAGTTGAGGTCCATGTACAATGAGCTGGTTGCACAACAATTGGAGAGGCTCATTCAAGATATTGAACGCCGAGTCATAAATTTNGCTCTGAAATCAACCAAACTTGGGGATTTGATTGACCCAAAGAGTAAGTCAGGCGCTGACAAGGTGGTTCAACAGATTGGGTTCTTAGGCCAACAACTTTTTGATAGAGGAAGATTCTATTCAAAGGGATTGGTTGAGGATGTAGCATCCCATTTTCATGCGAAGTGTTTTTATGATGGGGATGGCTATCCCTCCGCTGAGTATGGATTACTCAAAGGATGCTTTTTTCATGGTTTAGATCCATATGAAGAGTTGGTGCATTCAATTTCAACAAGGGAAATAATCGTGCGCTCTTCAAGAGGATTATCTGAACCAGGAACACTATTTAAGAACTTGATGGCCATTCTCCGTGATGTTGTGATTTGCTATGATCGAACTGTGAGAAATGTATGTAGTAATTCCATTATTCAGTTTGAGTATGGGATTCAAGCTGGAGACAAAGCTCAGCACTTATTCCCTGCTGGTGAGCCTGTAGGTGTCTTAGCTGCAACGTCCATGTCAAATCCTGCTTATAAAGCAGTCCTTGATGCTAGTCCTAGCAGCAATTCTTCATGGGAGTTTATGAAGGAAATACTACTATGCAAGGTCAATTTTAGGAATGAACCAATTGATCGTCGAGTAATTTTGTACTTGAATGACTGTGATTGCGGTAGGAGTTATTGCCGCGAAAAGGCTGCATGTTTAGTTAAAAATCAACTGAGAAAAGTCAGCCTAAAGGATACAGCAGTGGATTTCATTGTTGAGTACCAACAGCAGCGGAAACGCAGGGATAGTACTGAAGATGCAGGCCTTGTTGGTCATATTCATCTGAATGAGCTGATGTTAGAAGAGCTGAAGATCGACATGGCTGATGTTTTTCAAAGATGCCAAGATAGACTTAATTCCTTTAATCGAAGGAAAAAAGCTTATCAATTTCTTAGGAGAACTGAATTGTTTTTCAGCANGTCCTGCTCTTCTCTGAATTATTCTGCACCGTGTCTAACATTCCTTTGGCTGGATTGTGATGGTAATGATTTAGACAAAACAACAATTTTCCTTGCTGACATGATCTGCCCGGTTCTGTTAGATACAATAATCCAAGGAGACCCTCGTATTAGCTCAGCAAATATAATCTGGGTTACTCCAGACACAAACACATGGGTCCGCAACCCGAGCAAATCTTCTAATGGTGAATTGGCACTGGATATCATTCTTGAGAAGGCAGCTGTTAAACAAAGTGGTGATGCTTGGAGGATTGTACTTGACTCCTGCCTTCCGGTTCTTCATTTGATTGATACCAGGCGTTCCATCCCTTATGCTATTAAGCAAATTCAGGAATTACTGGGGATATCATGTACTTTTGATCAAGCAATTCAGCGTCTTGCGGCATCTGTAAAAATGGTGGCAAAAGGCGTTCTTAGAGAGCATCTCCTTCTTTTAGGAAGCAGTATGACTTGTGGTGGGAATTTGGTTGGTTTCAATACAGGTGGATATAAAGCACTGGCTCGCCAATTAAATATTCAAGTACCATTCACTGATGCAACACTCTTTACCCCAAGAAAATGTTTTGAAAGAGCTGCAGAGAAATGCCATGCAGACTCTTTATCAAGCATTGTTGCCTCTTGTTCCTGGGGTAAACATGTGGCCGTTGGTACAGGATCAAGATTTGATGTAGTATGGAATTCCAAAGAGATAACATCAAATGACATTGAAGGGATGGATGTTTACAATTTTCTTCACATGGTGAAAGGCCTTAACAATGGGGAAGAAGAAAACAATGCTTGTCTTGGTGAGGACATTGATGATTTGCTAGATGAGGAAAATGTNGACTGGGGCATGTCCCCACAGCATGCCTCTGAATTCGATGCTGTCTTNGAAGAGAATTTTGAACTACTGAATGGTTCAACGTCTAATGGTTGGGATGCTAACTCAGATCAGACCAAAACAAATTCNAATGAATGGTCTGCTTGGGGAAAAAATAAATCTGAAATACAAGTTGATGTGGCTGCAACGGACCAAGGGGACACACAGCAAAACAATGATTGGTCAGATTGGAGAAAAAATAAAGATGAAATACAAGATGGTGATCAGACCAAAAGGAATTCAAATGATTGGTCTAGTTGGAAAAAAAATAAATCTGAAATACAAGTTGATGTGGCTGTGAGGGACCAAGGGGACACAGATCAAAACAATGATCGGTCAGATTGGGGTAGAAATAAAGATGAAATACAAGATGGTAGGCCTGAACAAGCCCATGACAACTCTTGGAGAGCTCAAAAAAGGAAGACAGATGTAACCCCAGAGGACTCTTCCAAGCCCAGTGCTTGGAATGCAAATAAAGATACAACGAAACNCAAGTCGAATGATTGGTCCTCTTGGGGGAAAAATAAAGATGTTATACAAGATGGTGGCTCTAAAAGAGCCCAAGAAGATTCATGGAGCTCTCAGAAATGGACAGCTGATGTNATTCAAGAGGACTCTTCTAAGTCCTGGGGTTCAAACCAAGACGCAACAAAACCCAAGTCGAATGATTGGNCCTCTTGGGGNAAAAATAAAGATGATATACGAGATGGTGGTTCTAAAAGAGATGATTCATGGAGCTATCAGAAATTGAAAGCTGATGTCACCCAAGAGGACTCTTCTATGCCCAGTGCTTGGGGAGCAAAAAAAGATACAACAAAACCCGAGTCGAATGATTGGTCCCCTTGGGGGAAAAGTAAAAATGATATACAAGATGGTGGCTCTAAAAGAGCCCAAGAAGATTCATGGAGCTCTCAGAAATGGACAGCTGATGTCACCNAAGAGGACTCTTCTAAGTCCAGATGGGGTGCAAATAAAGATGCAACAAAACCCAAGGCGAATGATTGGTCCACTTGGGGAAAAAATACAGACGATATACAAGATGGTGGGTCTAGTAGACCACAAGAGGATTCTTGGAGCTCTGGTAAGTGGAAAGCTGAATCAAATGTTGGGGCTGATGTTATGCAAGATGCCTGGCAACATAATTCTGACAATGTAAAGGTGAATTGGGAAGCCAAAATGTCAGTTGACAATTGTTCCTGGGGTAAACCCAAATCACCAGAAAACAAANCCCGGGACTCCCAGAATGAGTCAAATCAAGCTGCAAGTTCACGTGGATGGGACTCACAAATTGTTTCTGCTAATTCTGACGGTGACAGAAATTATCAGTGGGGAAAACAAGGTAGAGAATCATTTAAGAAAAATCGCTATGAAGGTTCACAAGGTTGGGGTTCGAATGCAGGTGACCGGAGAAATAATAATCGCCCTCCTAGAGCACCTGGACAGAGATTAGATATATACTCATCTGAGGAACAGGATGTTCTCAAGGATATTGAACCTATTATGCAGTCAATCAGACGAATCATGCAACAACAAGGGTACAATGATGGGGATCCGCTAGCTGCCGATGATCAACATTTTGTTCTCGAGAATGTATTTGAACACCATCCGGATAAAGAAACGAAAATGGGTGCTGGGGTTGATCATGTCATGGTTAGCAGACACAGCAATTTTCAGGANAGCAGATGCTTTTATGTAGTTTTGAAGGATGGTAAAAGAGAAGACTTCTCGTACCGGAAGTGCCTGGANAACTTGATAAGGAAGAAATATCCAGACATTGCTGATTCGTTCATCGGCAAATATTTCTGGAAACCCCGTGGAAGGAGAGACCAGAACCAGACCCAAAATCCGGCGGGAGACCAGACCACAACTCCAACTGGGGACCAGACCACAGCTCCTGTGCCTGTAGAAACCAATGTGCCTATGGAAACCAATGAGTAGAAGATGAGAGTTGTGTCCATAATATTTGTACAGAAACGGCGCAGTTGAGGCAACTGAACAGTTTGTCACAACCGACCAATTTTCCTGTAGGAAACAGTGTCNCCCATTTTGTTGGTTGTCTTATCACTTTAGTTGTCACCTTTTTTTAGCCTGTGAATGATGATAAAACACTTGTGCAGATGTTAATATTTTAGCGTTTCAATTATGATAGCACTTGTTGTGCCTGGCAAAACTCTACCCTGCTCATCATGGTATCTAACCCTCAATCTCACTCGGCCTACAGACCATTCACCAAACTACTGTACCAGAATGGCAACCTTGTGATTACTTTCCTGCATTAGCTCTTGGTTGTTATTCTGNGAATAGGTTTTTCATCATTCTAAATCATCTGTAAACTGGTAATTTTCTTGGTTATAGTGTTCTGTTTCATTTGTGTAATACAAGGCCCAACTTCAATGGTTGNGAATCTCGATTTGTAGAAGTCTTGCACAATGTCCTATTAAGTATGGAGTGCTATNTAACTGCTTTA

Protein Sequence

>Glyur000057s00008991.1
HCRFTQEAMEDNPPSSVLDGKVVGIRFSMATRQEISTASISDSSISHASQLSNPFLGLPLEFGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKRILSLVCLNCLKMKKTKFPASSSGLAQRLLSPCCEEVNAAQVSIREVKTADGACYLALKVPKSKMQDGFWSFLEKYGYRYGVDHTRALLPCEHVVLMEELAKELDWVMEIIKRFPQETKKKLAGKGYFPQDGXVLKFLPVPPNCLSVPAVSDGVSVMSSDPSMTILRKLLRKVEIIKSSRSGEPNFESHQVEANDLQSVFDQYLQVRGTAKAARDIETRFGVNKELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKRINEVGIPLEVAQRITFEERVNTHNMSYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICAPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMLVKRCFLDRAAANQLGMFLSMPLPQPALLKASSGDSYWTSIQMLHCALPLSFDCTGEHYLIRQSEILEFDFNRDLLPAIINDIAASIFFGKGPQEALNFFDVLQPFLMESIFAHGFSVGLQEFSISRAVKRVLNRDXGKVSPLLCQLRSMYNELVAQQLERLIQDIERRVINXALKSTKLGDLIDPKSKSGADKVVQQIGFLGQQLFDRGRFYSKGLVEDVASHFHAKCFYDGDGYPSAEYGLLKGCFFHGLDPYEELVHSISTREIIVRSSRGLSEPGTLFKNLMAILRDVVICYDRTVRNVCSNSIIQFEYGIQAGDKAQHLFPAGEPVGVLAATSMSNPAYKAVLDASPSSNSSWEFMKEILLCKVNFRNEPIDRRVILYLNDCDCGRSYCREKAACLVKNQLRKVSLKDTAVDFIVEYQQQRKRRDSTEDAGLVGHIHLNELMLEELKIDMADVFQRCQDRLNSFNRRKKAYQFLRRTELFFSXSCSSLNYSAPCLTFLWLDCDGNDLDKTTIFLADMICPVLLDTIIQGDPRISSANIIWVTPDTNTWVRNPSKSSNGELALDIILEKAAVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVAKGVLREHLLLLGSSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPRKCFERAAEKCHADSLSSIVASCSWGKHVAVGTGSRFDVVWNSKEITSNDIEGMDVYNFLHMVKGLNNGEEENNACLGEDIDDLLDEENVDWGMSPQHASEFDAVXEENFELLNGSTSNGWDANSDQTKTNSNEWSAWGKNKSEIQVDVAATDQGDTQQNNDWSDWRKNKDEIQDGDQTKRNSNDWSSWKKNKSEIQVDVAVRDQGDTDQNNDRSDWGRNKDEIQDGRPEQAHDNSWRAQKRKTDVTPEDSSKPSAWNANKDTTKXKSNDWSSWGKNKDVIQDGGSKRAQEDSWSSQKWTADVIQEDSSKSWGSNQDATKPKSNDWXSWGKNKDDIRDGGSKRDDSWSYQKLKADVTQEDSSMPSAWGAKKDTTKPESNDWSPWGKSKNDIQDGGSKRAQEDSWSSQKWTADVTXEDSSKSRWGANKDATKPKANDWSTWGKNTDDIQDGGSSRPQEDSWSSGKWKAESNVGADVMQDAWQHNSDNVKVNWEAKMSVDNCSWGKPKSPENKXRDSQNESNQAASSRGWDSQIVSANSDGDRNYQWGKQGRESFKKNRYEGSQGWGSNAGDRRNNNRPPRAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYNDGDPLAADDQHFVLENVFEHHPDKETKMGAGVDHVMVSRHSNFQXSRCFYVVLKDGKREDFSYRKCLXNLIRKKYPDIADSFIGKYFWKPRGRRDQNQTQNPAGDQTTTPTGDQTTAPVPVETNVPMETNE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00057	190650	210645	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0009308 amine metabolic process

molecular_function

GO:0003677 DNA binding

GO:0003899 DNA-directed RNA polymerase activity

GO:0005507 copper ion binding

GO:0048038 quinone binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000057s00008991.1	PF04997.7	RNA_pol_Rpb1_1	64	115	7.60E-10
Glyur000057s00008991.1	PF00623.15	RNA_pol_Rpb1_2	348	500	2.70E-30
Glyur000057s00008991.1	PF04983.13	RNA_pol_Rpb1_3	504	648	5.40E-08
Glyur000057s00008991.1	PF04998.12	RNA_pol_Rpb1_5	778	870	2.40E-07
Glyur000057s00008991.1	PF11523.3	DUF3223	1820	1895	2.00E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.678
SRR1783600	control	7.730
SRR1783602	moderate drought stress	5.797
SRR1811619	moderate drought stress	5.726

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.084
DRR006520	Root Summer glycyrrhizin high producing strain	7.032
DRR006521	Root Winter glycyrrhizin high producing strain	1.863
DRR006522	Root Winter glycyrrhizin high producing strain	1.883
DRR006523	Root Summer glycyrrhizin low producing strain	5.695
DRR006524	Root Summer glycyrrhizin low producing strain	5.775
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.780
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.123
SRR2868004	Drought Stress (root)	13.302
SRR2967015	Control (root)	13.632

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.109
SRR9715740	Leaf	4.345
SRR9715741	Leaf	3.534
SRR9715739	Root	1.488
SRR9715742	Root	7.039
SRR9715743	Root	6.774

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.344
SRR8749028	MeJA induced 9h	14.682
SRR8749029	MeJA induced 9h	9.430
SRR8749030	Uninduced	2.268
SRR8749031	Uninduced	1.451
SRR8749032	Uninduced	1.875

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.501
SRR8400027	Control - Root	13.386