Gene detail

Gene detail information of Glyur000057s00008986.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G12330.4	5.00E-34	Lateral root primordium (LRP) protein-related
NR	XP_003627845.1	3.76E-138	Short internode related sequence [Medicago truncatula]
Swissprot	tr\|Q94CK9\|LRP1_ARATH	2.00E-49	Protein LATERAL ROOT PRIMORDIUM 1
trEMBL	tr\|G7LG16\|G7LG16_MEDTR	1.00E-138	LRP1 carboxy-terminal domain protein {ECO:0000313\|EMBL:AET02321.1}

Sequence

Transcript Sequence

>Glyur000057s00008986.1
CCCAGGTCCAAGAACTGTAAGTGAAGTTTCAGTGTCAGAAAGAAACCTGTAGCAGTAGCAGTAGCAGTAGTGGCTTTTTTAGCTTATTCATCATTCATTGCTACTCGATCATCACCAAAATCATCATACATCACATATTATTTTAGCAATCCAGAAGAGAATCTCAATCTCAACAAGGCTCTGTTTCAATTACATTCTCCCTATAAATAATAAATTAAATCTACACATCAGCACCCTCTAACCCTCTCTCACAGTCTTAATTAGATATAGACCTTGTTGTTTGTTGCAGCAATTGCAAANGAGCATGTTAGGCCTCAGAGACCTACTCCTTATAGCCCCAACCCACCCTTCTTCTTCTTCTTCTTCTCCCCTTCACCACCAACACCAACAACAACCAATTTCAGCAGACCACCATGCCTTACCTTCCTCATCTGCGCTTAGCGTTGGACTTGGCATCTTCCCACTCCTAACCACCACCATGCCACAGCCTCATCATCACAACAACAACGATGCTGCTCCTCAAGATTGTGGCAACACCAACCCCAACTACTTCTGGAACCTCAAGATGTGTCACCAGCACCAAAGGAATAAAGGGGTGATGATGATCAACGTAGAAGAAGATGAAATTGAAGGGAGCAACAAGCACCTTATGATGATGGGGTGTGAGGAAAGTGGGGTCTTTGGTGGTGAATTCAGGGTGTGTCAGGATTGTGGGAACAGGGCTAAGAAAGACTGCAGTTACAAGAGATGCAGGACATGTTGCAAGGGGCGTGGCTATCATTGCACCACTCACGTGAAGAGCACGTGGGTCCCTGCCTCACTTCGCCGGGACCGGAACACGGCGGCGGTGTCTGAAGGTGGTGACAGTGATGGTGGTGGTGGTGCTTCTTCTGGAACCAAGAGGTTAAGGACTTTGGTGTCATCATCACAGAATAATGCTGCTGCTACTGCTACCTCTCACAGTTCCACCTCTAATGCTACCACAACAAGAAGCTTAAGCTTAGACACTAATAACTCTTGTCACCAACAAGATGCTGGTTTCAAACAGACATTGCCACGTCATGTTCGTGCACCAGCTGTGTTCAAGTGCCACAGAGTGTGTGCTATTGGAAACGGTGAAGATGAAATTGCCTATTTGGCCACGGTCCATATTAGTGGCCATGTGTTCCAGGGGTTTCTTTATGATCAAGGTGTTGNTGATGATGATTGGAAGAGTGAGAAGATGCCTTGTGTTTCAGAACTGCAACTTGGAAGCAATGGCAGTGGAAAGAACATCATTAGGGAATGCTCTAATTCTGCAATTGGGGTTCCAACCAGCNGTGCCTACCCCGCTTCTGCTTGCTGAGATTGCTTTAATTGAAGGAGTTAACATGGACGGCGGACGGCGATGGGCGGATTGAAGAGTAGTGGGTCACTTTGAAAAATGTCACATTTCAATCAAGGGAGGACAAGTAGACAGCATCGCACGTGCACTTTTCAATGTTCACTAGTGTTGTGTTTAGTGTTTACAACTTTACATTTCCACAACCACGTTATCAATCATCTGTGTCTGTTAAGTGTTAACATTGGTGTATCTGATTCAGCAAGAGTTCCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00057	168899	172053	-

Gene family

Gene family	subfamily
Transcription Factors Family	SRS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000057s00008986.1	PF05142.7	DUF702	132	299	2.00E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.782
SRR1783600	control	9.611
SRR1783602	moderate drought stress	26.581
SRR1811619	moderate drought stress	26.099

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.752
DRR006520	Root Summer glycyrrhizin high producing strain	7.815
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	4.547
DRR006524	Root Summer glycyrrhizin low producing strain	4.280
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.720
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.673

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.278
SRR2868004	Drought Stress (root)	0.217
SRR2967015	Control (root)	0.433

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.423
SRR9715740	Leaf	0.735
SRR9715741	Leaf	0.263
SRR9715739	Root	12.734
SRR9715742	Root	7.900
SRR9715743	Root	8.003

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.598
SRR8749028	MeJA induced 9h	0.567
SRR8749029	MeJA induced 9h	0.458
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.285
SRR8400027	Control - Root	3.969