Gene detail information of Glyur000057s00008983 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G27890.1 | 2.00E-69 | NADPH:quinone oxidoreductase |
| NR | XP_003627843.1 | 1.19E-107 | NADPH:quinone oxidoreductase [Medicago truncatula] |
| COG | NP_249895.1 | 2.00E-37 | hypothetical protein PA1204 [Pseudomonas aeruginosa PAO1] |
| Swissprot | tr|Q9LK88|NQR_ARATH | 7.00E-87 | NADPH:quinone oxidoreductase |
| trEMBL | tr|B7FMX0|B7FMX0_MEDTR | 4.00E-108 | Uncharacterized protein {ECO:0000313|EMBL:AFK40478.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00057 | 145121 | 146879 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000057s00008983.1 | PF03358.10 | FMN_red | 6 | 154 | 3.70E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.388 |
| SRR1783600 | control | 29.625 |
| SRR1783602 | moderate drought stress | 25.054 |
| SRR1811619 | moderate drought stress | 24.475 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.068 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.087 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.916 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.172 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.296 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.815 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.903 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.752 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.800 |
| SRR2868004 | Drought Stress (root) | 13.010 |
| SRR2967015 | Control (root) | 10.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 26.986 |
| SRR9715740 | Leaf | 46.935 |
| SRR9715741 | Leaf | 30.753 |
| SRR9715739 | Root | 3.799 |
| SRR9715742 | Root | 10.545 |
| SRR9715743 | Root | 7.967 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.777 |
| SRR8749028 | MeJA induced 9h | 11.794 |
| SRR8749029 | MeJA induced 9h | 10.356 |
| SRR8749030 | Uninduced | 12.429 |
| SRR8749031 | Uninduced | 5.359 |
| SRR8749032 | Uninduced | 9.635 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.921 |
| SRR8400027 | Control - Root | 19.116 |