Gene detail information of Glyur000057s00008982 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02080.1 | 7.00E-71 | Ribosomal protein S19e family protein |
| NR | KHN12325.1 | 3.77E-97 | 40S ribosomal protein S19-1 [Glycine soja] |
| COG | YP_007175351.1 | 3.00E-31 | ribosomal protein S19E (S16A) [Caldisphaera lagunensis DSM 15908] |
| Swissprot | tr|Q9SGA6|RS191_ARATH | 4.00E-90 | 40S ribosomal protein S19-1 |
| trEMBL | tr|I1JW21|I1JW21_SOYBN | 1.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G16660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00057 | 137073 | 139154 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000057s00008982.1 | PF01090.14 | Ribosomal_S19e | 6 | 140 | 9.60E-56 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 36.837 |
| SRR1783600 | control | 37.330 |
| SRR1783602 | moderate drought stress | 27.424 |
| SRR1811619 | moderate drought stress | 27.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 120.103 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 116.903 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 112.760 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 110.261 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 99.075 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 98.623 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.689 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 271.096 |
| SRR2868004 | Drought Stress (root) | 173.488 |
| SRR2967015 | Control (root) | 145.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 109.196 |
| SRR9715740 | Leaf | 92.317 |
| SRR9715741 | Leaf | 80.468 |
| SRR9715739 | Root | 107.980 |
| SRR9715742 | Root | 107.264 |
| SRR9715743 | Root | 109.388 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 238.620 |
| SRR8749028 | MeJA induced 9h | 116.825 |
| SRR8749029 | MeJA induced 9h | 146.154 |
| SRR8749030 | Uninduced | 40.475 |
| SRR8749031 | Uninduced | 15.129 |
| SRR8749032 | Uninduced | 40.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 177.447 |
| SRR8400027 | Control - Root | 177.550 |