Gene detail information of Glyur000057s00008973 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08315.1 | 5.00E-91 | ARM repeat superfamily protein |
| NR | XP_004511041.1 | 0 | PREDICTED: U-box domain-containing protein 4-like [Cicer arietinum] |
| Swissprot | tr|O22193|PUB4_ARATH | 5.00E-32 | U-box domain-containing protein 4 |
| trEMBL | tr|G7LGS1|G7LGS1_MEDTR | 0 | Armadillo/beta-catenin repeat protein, putative {ECO:0000313|EMBL:AET02361.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00057 | 70751 | 71722 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000057s00008973.1 | PF00514.18 | Arm | 37 | 76 | 3.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.479 |
| SRR1783600 | control | 32.628 |
| SRR1783602 | moderate drought stress | 41.658 |
| SRR1811619 | moderate drought stress | 41.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 57.988 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 57.516 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.636 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.176 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 85.006 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 85.172 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.989 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.663 |
| SRR2868004 | Drought Stress (root) | 44.280 |
| SRR2967015 | Control (root) | 59.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 61.559 |
| SRR9715740 | Leaf | 51.368 |
| SRR9715741 | Leaf | 86.344 |
| SRR9715739 | Root | 121.665 |
| SRR9715742 | Root | 75.010 |
| SRR9715743 | Root | 86.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.930 |
| SRR8749028 | MeJA induced 9h | 34.835 |
| SRR8749029 | MeJA induced 9h | 28.993 |
| SRR8749030 | Uninduced | 18.596 |
| SRR8749031 | Uninduced | 27.978 |
| SRR8749032 | Uninduced | 29.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.358 |
| SRR8400027 | Control - Root | 26.127 |