Gene detail information of Glyur000057s00008969 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G12600.1 | 1.00E-64 | nudix hydrolase homolog 16 |
| NR | XP_003542815.1 | 1.21E-118 | PREDICTED: nudix hydrolase 16, mitochondrial-like [Glycine max] |
| COG | YP_007147313.1 | 2.00E-12 | putative NTP pyrophosphohydrolase [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|Q9LHK1|NUD16_ARATH | 5.00E-82 | Nudix hydrolase 16, mitochondrial (Precursor) |
| trEMBL | tr|I1M0Q4|I1M0Q4_SOYBN | 5.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G26490.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00057 | 43155 | 47615 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000057s00008969.1 | PF00293.23 | NUDIX | 21 | 162 | 9.60E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.351 |
| SRR1783600 | control | 0.319 |
| SRR1783602 | moderate drought stress | 0.358 |
| SRR1811619 | moderate drought stress | 0.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.854 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.979 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.598 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.148 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.207 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.683 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.976 |
| SRR2868004 | Drought Stress (root) | 11.194 |
| SRR2967015 | Control (root) | 10.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.196 |
| SRR9715740 | Leaf | 3.843 |
| SRR9715741 | Leaf | 5.575 |
| SRR9715739 | Root | 0.310 |
| SRR9715742 | Root | 2.267 |
| SRR9715743 | Root | 1.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.219 |
| SRR8749028 | MeJA induced 9h | 18.668 |
| SRR8749029 | MeJA induced 9h | 22.144 |
| SRR8749030 | Uninduced | 30.910 |
| SRR8749031 | Uninduced | 40.552 |
| SRR8749032 | Uninduced | 26.179 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.131 |
| SRR8400027 | Control - Root | 5.940 |