Gene detail

Gene detail information of Glyur000057s00008962

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	7.00E-124	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003542813.2	0	PREDICTED: TMV resistance protein N-like isoform X1 [Glycine max]
COG	YP_007098491.1	4.00E-11	Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q40392\|TMVRN_NICGU	5.00E-148	TMV resistance protein N
trEMBL	tr\|I1M0Q1\|I1M0Q1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G26460.4}

Sequence

Transcript Sequence

>Glyur000057s00008962.1
ATGGCAGATTCAGCAACCTTGGTCTCCTCTCTTTCGCGGTTCACGTATGATGTATTCCTCAGCTTTCGAGGGGAGGACACTCGCCACGGTTTTACCAGCCATCTCTGGAAATCCCTCAGTGACAGGGGAATCTGCACCTTCTTTGACGACGCGGAGCTCAAGAAGGGAGACGAAATCACACCATCACTTGTGAAGGCCATTAACGAGTCCAGGGCTGCCGTTGTCGTGTTCTCCCAGAACTACGCAGCCTCTCGTTTCTGCTTGGATGAACTTGTCTGCATCCTCGATTATGGAGAGGCACTGGCTGTGCATGAGAAGAATTTCAATTCTGACATGGAAAGAATCCAAAAATGGAAACGCGCTCTGTTTGAAGCAGCCAACCTAGTCGGCTGGCATTTCGAACACGGGCACCGATACGAGTACGAGTTCATCGAGGATATTGTTAAAGAGGTCAGCAGCAAACTTCATTCTACCACTTTAATGGCTACTGATCACCTAGTTGGGCTCGAACATAGAGTGATGGATCTAGAGTGGCTTGCAGACGACAAATCCCGTGATAAATATAGAATGATAGGGATATGGGGAATGGGAGGCGTAGGTAAAACAACACTTGCTCGAGCGTTCTTTCACTCCGCTGCTCTCCGGTTTGAGGCCTCGTGCTTTCTCGATGACGTGAGAGAAATATCAATGAAAAGTGGCCTAGTGCACCTCCAAGAGATCCTTCTTGCGGAGACACTCGGGGAGAAGGACCTTCGACTAGCAAGTGTCAGCGAAGGAACTCGGCTGCTAAAACATAGGCTCCACCGCAAGAAGGTTCTTCTGGTTCTGGATGATGTTGACAACCTGGATCAGTTGCAGGCAGTTGCTGGAGGCACCAATTGGTTTGGTTCTGGCAGCCTTGTCATCACTACTACTCGGGACAAACATTTGTTAGAAAGACATGGGGTCGATAGAACATACGAGGTAGAGGAGTTGACTGAGGATGAAGCTCTCGAATTGCTTTGCTGGAAGGCTTTCAAAACTGACAGAGTCCGCCCGGTCTATGTCGATATGTTGTACCGTGCTAAAGCCTATGCCTCTGGCATTCCTTTGGCTTTGGAAGTTATAGGCTCAAACTTGTATGGAAAAGGAATAGAAGAATGGAAATCTACATTAGCTTCGTACGAACAAATTCCCAATACGGATATTCAAATGATACTTAAACTGAGCTACGACGCTCTGGGTGAACAAGAGAAGCAAATTTTTCTCGACATCGCCTGTTTCTTCAATTGTCGCAAACTCACAGAAGTTGAACGTATACTTAGTGCCCATCATGGTTACTGCTTGAAACCCCGCATTAGAGCCTTGGTTCAAAAATCTCTCATCAAGATTAACGAGTGGGGTCGTGTGACAATGCATGACTTGCTACAGGACTTGGGCAGAGAAATTGTTCGACGGGAGTCACCTGAACACCCCGGCAAACGCAGCAGGCTATGGTCCACGGAGGATATAATTCAGGTTCTAGAAGAAAATGTGGGAACAAGTGAAATTCAAATCATTATTCTGGATTCCCCCAAATCTGAAGGAGTGGTACAATGGGATGGAAAGGCCTTCATGAAGATGAAAGACCTCCGGACGCTTATTATCAGAAATGAGTGTTTTTCAGAAGGTCCGAAATTTCTCCCAAATAGCTTAAGAGTGCTGGAATGGTGGGGATATCCTCTGCAGTCTTTACCATCTGATTTTTATGTAGAGAAACTGGCTATTTTGAAGTTACCCTATGGTGGCTTTTCACCCGAGCTGTCCAAACATTTGAATCTTGACGGGTGCAAATTTATAACACACATACCTGATGTATCTGGTGCCCCAAATTTAGAAGAATTATCTCTTGTTTATTGTGAGAATATAGTTGAAATTCATGAGTCGGTTGGATTCTTGAGTAAACTTAAAATCATGAGTGTTGAGGGTTGTCGCAAGCTTCGGAGTTTGCCTCCCATCAATTTGACCTCTCTTCAATACCTCAATCTTTCACATTGTTTAAGCCTTGTGAGTTTTCCAGAGATATTAGAAAATATGGAAAATATAACACATCTTTCGTTGGAGTACACTGCCATAAAGGAGTTGCCATATTCAATTGGAAAACTCATTCGGCTTCGAAGGCTAGAACTGCACGGCTGTGGAATGTTTCAGTTACCGAGCAGCATTGTTCTTTTGGCAGAACTTGAGTGGTTAAGCATTTCACAATGTGAAGGGTTGCAATCATCTAGACAAGACAAAGGCACAGAAAAACTGAGCTCAAAGGTGTCTTCAAACGTTAAACATATTGATTTCTTGTCTTGCAATATATCAGACGAGTTCATACAAATAGGTCTCACTTGGTTCGCCAATGTGAAAGAGTTAGACCTTTCAACGAATAATTTCACAATTCTACCTGCATGCATCCAAGAATGTCACCTTTTGACAAAACTTAATTTGGATTATTGTGTGAATCTTGAAAAAATTGGAGGGATTCCACCCAATTTAGAAACATTCTCTGCTGTACGGTGCACATCCTTGAAAGATTTAGACCTCACAGTTCTGCTTCCATCCAACAAAGAATTTTGCTTTTTGAGGGAACTTATTTTGGATGATTGTGACAATCTTCAAGAAATTAGAGGGATTCCACCGAGCATAGAACTTTTGTCTGCAAGAAACTGCAGATCCTTGACTGCCTCGTGTAGAAGGATGTTATTGACTCAGGAATTACACGAGGTGGGAAATAAGAGATTTTGTTTGCCAGGATCACAAATGCCGGAATGGTTTGAGCACTGTAGCCGGGGACATTCAATTTCTTTCTGGTTTCGTAACAAGTTCCCTGCAATATCTCTCTGCCTTGTTGGGCCCATGCATAAGCTCCCTCTTAAGTTTAGACCCATTGTGATCATCAATGGCAATATATCGAAAACAGATTTCCAAACTGAAAAAGGGTTTTGTTTTGAGTTCTCATCATCAACTGATCATATACATATTTTTGGTGAAAGACAGATAAAACTTGAAGATAACGTGGATGAAGTTCCTTCAGAAAATGAATGGAATCATGCTGTGGTTTCTGTTGATATTGATTTGAATTGGAACCCGACGGAACCATTTGTTGTGCAAACTGGACTCCATGTAATCGAACAAGAAAGTAGCATGGACAACATTCGATTCACCCATGCTTATAACCAACCATTTTTGAAAGAGATGAATGTATTGGGGGACATGGAAGTTTCTCGGAGTCTATTTGATCCCATATCGACTAGAGAAGTGGCTTATGTAGTGCATAATAGGGCTTGGGTAGTCCTCACCTTAGTAGCCAGTTTTGTGGGGGTTGAGTTAAGCCCTAAAAGCCCAAATTCTAAGATGATGTCTAGTTCCGAGCGTGAAAGCCCAAATTCTAAGATGGTATCAGAGCCTATTTTAGATTCGTTATTGGGCCACTCGCATTTGTCCATGCTTCAGATGTCTAGTTCTGGGCGTAAGGGGTTGTGTTAA

Protein Sequence

>Glyur000057s00008962.1
MADSATLVSSLSRFTYDVFLSFRGEDTRHGFTSHLWKSLSDRGICTFFDDAELKKGDEITPSLVKAINESRAAVVVFSQNYAASRFCLDELVCILDYGEALAVHEKNFNSDMERIQKWKRALFEAANLVGWHFEHGHRYEYEFIEDIVKEVSSKLHSTTLMATDHLVGLEHRVMDLEWLADDKSRDKYRMIGIWGMGGVGKTTLARAFFHSAALRFEASCFLDDVREISMKSGLVHLQEILLAETLGEKDLRLASVSEGTRLLKHRLHRKKVLLVLDDVDNLDQLQAVAGGTNWFGSGSLVITTTRDKHLLERHGVDRTYEVEELTEDEALELLCWKAFKTDRVRPVYVDMLYRAKAYASGIPLALEVIGSNLYGKGIEEWKSTLASYEQIPNTDIQMILKLSYDALGEQEKQIFLDIACFFNCRKLTEVERILSAHHGYCLKPRIRALVQKSLIKINEWGRVTMHDLLQDLGREIVRRESPEHPGKRSRLWSTEDIIQVLEENVGTSEIQIIILDSPKSEGVVQWDGKAFMKMKDLRTLIIRNECFSEGPKFLPNSLRVLEWWGYPLQSLPSDFYVEKLAILKLPYGGFSPELSKHLNLDGCKFITHIPDVSGAPNLEELSLVYCENIVEIHESVGFLSKLKIMSVEGCRKLRSLPPINLTSLQYLNLSHCLSLVSFPEILENMENITHLSLEYTAIKELPYSIGKLIRLRRLELHGCGMFQLPSSIVLLAELEWLSISQCEGLQSSRQDKGTEKLSSKVSSNVKHIDFLSCNISDEFIQIGLTWFANVKELDLSTNNFTILPACIQECHLLTKLNLDYCVNLEKIGGIPPNLETFSAVRCTSLKDLDLTVLLPSNKEFCFLRELILDDCDNLQEIRGIPPSIELLSARNCRSLTASCRRMLLTQELHEVGNKRFCLPGSQMPEWFEHCSRGHSISFWFRNKFPAISLCLVGPMHKLPLKFRPIVIINGNISKTDFQTEKGFCFEFSSSTDHIHIFGERQIKLEDNVDEVPSENEWNHAVVSVDIDLNWNPTEPFVVQTGLHVIEQESSMDNIRFTHAYNQPFLKEMNVLGDMEVSRSLFDPISTREVAYVVHNRAWVVLTLVASFVGVELSPKSPNSKMMSSSERESPNSKMVSEPILDSLLGHSHLSMLQMSSSGRKGLC

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00057	12019	16900	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000057s00008962.1	PF01582.15	TIR	18	95	2.00E-20
Glyur000057s00008962.1	PF00931.17	NB-ARC	178	427	3.80E-40
Glyur000057s00008962.1	PF00560.28	LRR_1	663	684	0.12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.100
SRR1783600	control	5.295
SRR1783602	moderate drought stress	6.620
SRR1811619	moderate drought stress	6.234

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.213
DRR006520	Root Summer glycyrrhizin high producing strain	2.258
DRR006521	Root Winter glycyrrhizin high producing strain	3.251
DRR006522	Root Winter glycyrrhizin high producing strain	3.411
DRR006523	Root Summer glycyrrhizin low producing strain	3.443
DRR006524	Root Summer glycyrrhizin low producing strain	3.173
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.790
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.616

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.858
SRR2868004	Drought Stress (root)	12.090
SRR2967015	Control (root)	14.134

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.544
SRR9715740	Leaf	2.617
SRR9715741	Leaf	2.783
SRR9715739	Root	0.993
SRR9715742	Root	4.322
SRR9715743	Root	3.005

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.067
SRR8749028	MeJA induced 9h	9.345
SRR8749029	MeJA induced 9h	2.231
SRR8749030	Uninduced	3.216
SRR8749031	Uninduced	3.969
SRR8749032	Uninduced	1.811

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.352
SRR8400027	Control - Root	8.660