Gene detail

Gene detail information of Glyur000057s00008961

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64070.1	9.00E-23	Disease resistance protein (TIR-NBS-LRR class) family
NR	XP_003627902.1	1.35E-78	Resistance protein [Medicago truncatula]
Swissprot	tr\|Q6L438\|R1A6_SOLDE	1.00E-06	Putative late blight resistance protein homolog R1A-6
trEMBL	tr\|G7LGT8\|G7LGT8_MEDTR	5.00E-79	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AET02378.1}

Sequence

Transcript Sequence

>Glyur000057s00008961.1
CCTCATCCTTTCATCTGAGCACTATCCATCTTCTGCATTTTGCCGAGAGGAATTTGTTGAGATGCTTCATGAGTCCGCTAAGGGGAACGGTCGACGGATTTTGATGGTTTTCTACAACTCGAGTCCTTCTGATGTGCTACGACAGCTGCGGCGAGAGTTGGATCTTCATAAGAACTCTGTCAAGCCTGAATTGTTGGACAAATTTACCAAGGCTCTNGAAATATTAGATGCAGCCAACTTTTCCATCTGGCAACTCCAAGGCGAAGGACAAATATGAATTTGAGTACATCAATGATATTGTTCGAGAGGTCTCTAAACATGTGGCTTGCCCAATTGGTCTTGGTAGTCGTGAGCTTGCAGTTATGTCTTATTTGGGTAAGTNTGATGGATTTAATGGGGGAGTCCCTGTGCTAGCAATACGTGGAGATCCTGGAGGAGGTAAAACAACGGTTGCTCGCAGAGTTTATCAATCCTATGCTGTCAAAGGCAGCTTTGACTATTGTTGCTTTATTGATAAGGTAGAAGGGGATTTAAATGAACATGGATTATTGCATCTCCAAGTGATGCTTCTTTCTGAAATAGTTGGAGTCGACTATACTGGGTTTCAAAATGACAATGAAGCGATGGCAAAGATAAAGCCTATGCTCAATGAAAAGAAGGTCCTCTTAGTTATTGAAGATGTTGATGATCCAAAGCTTTTGAAAGCCATTGTTGATCTACCAACTAGTTTGTTTAGTTCTGCCAGCAAAGTCATCATCATTACTGCTAAGGACGAACAATTTCTGAGAGATGGTGGGATTCAAGATATACATGGTGTAGAAAAATTCACATTGGAAGAGGCTTGTAAATTGCTTAGTGTGAAAGCTTTTTACTCTGAGAAATTTCATCCCCGTTTTATAAGTATTTTTGAAGGAGTCAAAACGTTTACTTCTGGGAATCCATTCCTTTTAAGTGTAATTGGTTCCTTCTTTGGTGGAAAAAGTTTAGAAGTCTGTCAAACTGCANTATGTCGATATGAGTCACTTCCAAAAAAAGATACCAAAGAGATTCTACAAATAAGCTTTAATGCTTTGGAGGAATCTCAGAAGACCATGTTAATTGCCATTGCAAATGACTTCAAAAATCAGGATTTGGCAGAGCTAGAAGGGTCGGAGAAAGCAGTTGTCGTCCTTGTAATACCACCTAAAAAGGAATGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00057	2365	6341	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000057s00008961.1	PF00931.17	NB-ARC	56	294	4.60E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.106
SRR1783600	control	2.052
SRR1783602	moderate drought stress	2.554
SRR1811619	moderate drought stress	2.547

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.438
DRR006520	Root Summer glycyrrhizin high producing strain	3.124
DRR006521	Root Winter glycyrrhizin high producing strain	2.705
DRR006522	Root Winter glycyrrhizin high producing strain	2.734
DRR006523	Root Summer glycyrrhizin low producing strain	1.655
DRR006524	Root Summer glycyrrhizin low producing strain	1.770
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.809
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.955

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.241
SRR2868004	Drought Stress (root)	7.892
SRR2967015	Control (root)	8.880

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.375
SRR9715740	Leaf	4.097
SRR9715741	Leaf	4.670
SRR9715739	Root	0.736
SRR9715742	Root	3.023
SRR9715743	Root	2.470

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.888
SRR8749028	MeJA induced 9h	1.076
SRR8749029	MeJA induced 9h	0.682
SRR8749030	Uninduced	0.443
SRR8749031	Uninduced	0.513
SRR8749032	Uninduced	0.083

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.044
SRR8400027	Control - Root	9.815