Gene detail

Gene detail information of Glyur000056s00004172

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28330.1	2.00E-29	dormancy-associated protein-like 1
NR	ABR15095.1	3.33E-76	dormancy-associated protein/auxin-repressed protein [Glycyrrhiza uralensis]
Swissprot	tr\|Q05349\|12KD_FRAAN	5.00E-33	Auxin-repressed 12.5 kDa protein
trEMBL	tr\|A6MZ93\|A6MZ93_GLYUR	1.00E-76	Dormancy-associated protein/auxin-repressed protein {ECO:0000313\|EMBL:ABR15095.1}

Sequence

Transcript Sequence

>Glyur000056s00004172.1
CTTATTTTACTATCGCCACTCACTATCACGTCAAAACAAATGAAAGTTACACCTGGAAGCGAGAAAACACTGGATCCCATTTTGGCCAGAGATATTTTAAGCATCACCCCCCCTCCTCATTTCATTTTTCTCTATATATAGAACGCACACAGACTCTTCAAGAATCCCTATTAGTTTATTTCNTCAAGAAAAACAAATTAACTAGACAAGACTAATTTTCCAAGATGTTAGAGAAGCTTTGGGATGATGTTGTGGCTGGCCCTCAACCCGAGCGTGGCCTTGAAAGGCTTAGGAAGCTAACCACCAGCGTCAAAGATGAAGGACAAGGGATAAAGTTACAGAGGAACCCGTCGATGCCATCGACACCGACAACCCCGGGGACACCGACGACACCTACGACACCCGGGTCGGNGCGTAAGGCTGACAACGTTTGGAGGAGCGTGTTCAATCCCGGGAGTAACTCCGCCACAAAGTCCATTGGGGCAGAATATTTTGACAAACCACTCCCCAACACTCCCACTGTCTATGATTGGCTCTACAGTGGGGATACCAGGAGCAAGCACCGCTGAGGTGGCGGCCATCTCCCCGTGGGTTGCATGTAAATAGTGTCCTGTTTTGTTGAGCACCTGCCACGTCATTGCATCTACCGTCACGTGTNTTGACTTGATATATTGCCCTGTTGAAGACTGAGTTGTGTGATTATGTGAATGTATAATGCCTTAATATTAAGGTAGTATGCTTTGTTTGTACTTGAGTTTTGTTATCCAGATCTGCCGTAAACTTTGGTGGAGGATTAATCTTGTTTTTATTTATTATCATTTGGTAATTAAGTGATGGGTTATCTTCTATCTATTGAATAAAAGTGTGTTTAACCTTTCTTTCATATCGCCCGTAACCAGTGTTATCGATCAGATAGCGCAATTATACAACTCCACCTCAGGTAAAATCTTGAATCTTGAATTGTAATTAAATGGAGTAATATTTATATGAAGCGCGTGATTAATTTGTTTTGGCTAAACATATTAATATTTAATCTCAGTGAGGTGAGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	414143	416077	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004172.1	PF05564.7	Auxin_repressed	5	114	7.30E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2174.344
SRR1783600	control	2181.929
SRR1783602	moderate drought stress	4109.242
SRR1811619	moderate drought stress	4085.732

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4539.310
DRR006520	Root Summer glycyrrhizin high producing strain	4485.810
DRR006521	Root Winter glycyrrhizin high producing strain	5671.113
DRR006522	Root Winter glycyrrhizin high producing strain	5519.009
DRR006523	Root Summer glycyrrhizin low producing strain	5016.911
DRR006524	Root Summer glycyrrhizin low producing strain	5022.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	1005.932
DRR006526	Leaf Summer glycyrrhizin high producing strain	997.437

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	571.176
SRR2868004	Drought Stress (root)	1247.913
SRR2967015	Control (root)	3528.444

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	321.953
SRR9715740	Leaf	476.829
SRR9715741	Leaf	777.503
SRR9715739	Root	2050.609
SRR9715742	Root	1468.448
SRR9715743	Root	1498.653

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	149.659
SRR8749028	MeJA induced 9h	398.823
SRR8749029	MeJA induced 9h	236.915
SRR8749030	Uninduced	90.476
SRR8749031	Uninduced	57.085
SRR8749032	Uninduced	130.535

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	792.236
SRR8400027	Control - Root	948.851