Gene detail

Gene detail information of Glyur000056s00004168.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53160.2	6.00E-32	squamosa promoter binding protein-like 4
NR	XP_003541730.1	6.22E-62	PREDICTED: squamosa promoter-binding protein 1-like isoform X1 [Glycine max]
Swissprot	tr\|Q38741\|SBP1_ANTMA	7.00E-44	Squamosa promoter-binding protein 1
trEMBL	tr\|I1M219\|I1M219_SOYBN	2.00E-62	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G31090.1}

Sequence

Transcript Sequence

>Glyur000056s00004168.1
CCTTTTCACTATTAACCCTCAAGTTTGGCAACCAATAAATGAGGACCCTTTTGTGGTCCCATCCTCTCATTCTATTTACTTACCCTTGTGTTTATTTTTTTCTTCCTATCTATATATCAAGTGGTATTTCCTTGACTTCACCATAACCAATTAATTCTTCAATTCTGGGTCTATATATTTTTCTCTCCGGCCAGATTTTTTTGGGTGAGTAGTTATGGATGAAAGCTGGGGTACTGAGGGAAAGATTAGCTATAAGTACAAGGAGGAGGATGAGTGTGAAGAAGAAGAAGAGGAAGAGGTGGGTTATGGAGAGGATGGGAGGAAGAGAAGGGTTGTGACTGATCTCTACAGTAGCAAGAGAGGGTCCAAAGCTGGAGGGTCAGTGCCACCTTCTTGTCAGGTNGATGGTTGTAATGCTGATCTGAGTGAGGCTAAGCAGTACCACCGTCGCCATAAGGTCTGTGAGTACCATGCTAAGGCTCATTCCGTACTCATCTCAGAGCAACACCAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTCAAAAAGAAGCTGTAGAAGGCGTTTGGCCGGACATAATGAGAGGCGTCGCAAAAATGCATCTGATCAATATCAAGGAGAAGGATTTAATTGATGAGATGATGGACAAAAATGAACATTAAGATGAGATAATATAATAACGGTCTAGATGGGCACGTCGAGCAGCACATGATTGAAATAAAGTCTTCCATGAATCCTTCACATTCAAATTGATGTTATTACATCTCCAAGGAAGCTCTCTCTCTTCTGTCAATCTTTTTTTCTCTCTGTCTCTTTCTTTATATATATATGCATGCTAAGATTGCTGCTGGGAGTTATATCTACGAGAACATTTTTACCTGAAATCATAAAAAAATCTTGCTTGACTACATGCCTTTGAAAGTATGTGTGTTTCTTTTGCATCCTTGTTCAGTTCATTAGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	398606	401315	+

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004168.1	PF03110.9	SBP	61	137	6.90E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.646
SRR1783600	control	22.691
SRR1783602	moderate drought stress	15.440
SRR1811619	moderate drought stress	15.400

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.145
DRR006520	Root Summer glycyrrhizin high producing strain	16.914
DRR006521	Root Winter glycyrrhizin high producing strain	10.419
DRR006522	Root Winter glycyrrhizin high producing strain	10.266
DRR006523	Root Summer glycyrrhizin low producing strain	8.158
DRR006524	Root Summer glycyrrhizin low producing strain	8.340
DRR006525	Leaf Summer glycyrrhizin high producing strain	72.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	72.262

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.082
SRR2868004	Drought Stress (root)	0.050
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.094
SRR9715740	Leaf	45.797
SRR9715741	Leaf	36.543
SRR9715739	Root	1.992
SRR9715742	Root	20.488
SRR9715743	Root	17.430

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.434
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.065
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.389
SRR8400027	Control - Root	3.405