Gene detail information of Glyur000056s00004166 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28310.2 | 4.00E-16 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_007148145.1 | 7.26E-75 | hypothetical protein PHAVU_006G184000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FZA4|DOF14_ARATH | 2.00E-19 | Dof zinc finger protein DOF1.4 |
| trEMBL | tr|V7BQA0|V7BQA0_PHAVU | 3.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:ESW20139.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 375280 | 376188 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000056s00004166.1 | PF02701.10 | zf-Dof | 2 | 36 | 3.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 29.234 |
| SRR1783600 | control | 29.631 |
| SRR1783602 | moderate drought stress | 36.048 |
| SRR1811619 | moderate drought stress | 36.624 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.578 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.076 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.320 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.528 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.947 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.054 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.414 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.598 |
| SRR2868004 | Drought Stress (root) | 36.215 |
| SRR2967015 | Control (root) | 34.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.443 |
| SRR9715740 | Leaf | 24.047 |
| SRR9715741 | Leaf | 13.887 |
| SRR9715739 | Root | 42.620 |
| SRR9715742 | Root | 54.800 |
| SRR9715743 | Root | 50.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 51.087 |
| SRR8400027 | Control - Root | 60.210 |