Gene detail

Gene detail information of Glyur000056s00004162

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31700.1	1.00E-104	ribosomal protein S6
NR	XP_003545992.1	6.04E-173	PREDICTED: 40S ribosomal protein S6-like [Glycine max]
COG	YP_001737450.1	4.00E-20	30S ribosomal protein S6e [Candidatus Korarchaeum cryptofilum OPF8]
Swissprot	tr\|Q9M3V8\|RS6_ASPOF	1.00E-168	40S ribosomal protein S6
trEMBL	tr\|I1M223\|I1M223_SOYBN	2.00E-173	40S ribosomal protein S6 {ECO:0000256\|PIRNR:PIRNR002129}

Sequence

Transcript Sequence

>Glyur000056s00004162.1
GGCATCAGAAACAGGCTTTTTTTGGTCGAACATCTGAAACAGGCTTAGCTGGGTGGATATGGGCTTGTTGGGCCCAATATTTTAACGAGGAAAACAATTTAAAAAACACTACCTCGCCGGTTATTCGAAAACCCTAATTTCTATTATCTTTGAGCTCAGTCGCCGCGACGCAAGCGCAGACACAGAGATCCAAGTCGACTTTTGAAAATGAAGTTCAACATTGCGAATCCCACCACTGGATGCCAGAAGAAGCTGGAAATCGATGACGATCAGAAGCTTCGAGCATTCTGGGACAAGAGGATCTCACAGGAGGTTAATGGTGATGCTTTGGGTGAGGAATTCAGAGGCTATGTCTTCAAGATCACTGGAGGTTGTGACAAGCAAGGATTTCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGCTCCACCGAGGAACTCCTTGTTTCCGNGGTTATGGAAGGCGCAATGGAGAGCGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGAAAACGATTTGCCAGGACTGACAGATGTTGAAAAGCCAAGGATGAGGGGTCCAAAGAGAGCTTCCAAGATCCGTAAGCTGTTCAATCTGTCTAAGGAGGATGATGTCAGGAAGTATGTCAACACATACCGCAGGACATTCACAACTAAAAATGGGAAAAAGGTTAGCAAGGCTCCAAAGATACAGCGACTGGTCACTCCCCTGACACTTCAAAGAAAGCGGGCAAGGATTGCAGATAAGAAGAAAAGGATTGCCAAAGCAAAATCTGAGGCAGCAGAGTACCAAAAACTTCTTGCCTCCAGGTTGAAGGAGCAGAGGGAACGCCGCAGCGAGAGTTTGGCTAAGAGGAGATCCAAGATATCCAGTGTTGCTAAGCAAGGTGCCTCAGCATAGTCTGTTTTCAGACGGATGAAGTTTTATACTTCGCCCTAGGTTTTGATAGTCTTATTTCATGGTGTCAGTGTTATGATATTTTGCAATTCAATACCGTTGTTTTCTTGATACACTATTTTTCATGTTGTGTTCAACAGTTTACTAGAATTTAAGTTTTGCCTTGATGGATTTCGCGGCCTTTTAATATATAGTTGGTATTTATGGACCGGCATTTTGTCCCCCCAAACTACATTAACTCACATAGGTTCATAGCTTTATGAAGACATGAAAAGTGTAAAATCAGTAGAAGGGGACAATCATATTGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	337142	339580	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004162.1	PF01092.14	Ribosomal_S6e	1	128	1.70E-55

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	95.187
SRR1783600	control	95.175
SRR1783602	moderate drought stress	84.135
SRR1811619	moderate drought stress	83.768

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	185.415
DRR006520	Root Summer glycyrrhizin high producing strain	183.685
DRR006521	Root Winter glycyrrhizin high producing strain	85.744
DRR006522	Root Winter glycyrrhizin high producing strain	83.481
DRR006523	Root Summer glycyrrhizin low producing strain	140.943
DRR006524	Root Summer glycyrrhizin low producing strain	141.263
DRR006525	Leaf Summer glycyrrhizin high producing strain	70.165
DRR006526	Leaf Summer glycyrrhizin high producing strain	69.512

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	347.547
SRR2868004	Drought Stress (root)	226.940
SRR2967015	Control (root)	212.786

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	146.404
SRR9715740	Leaf	128.783
SRR9715741	Leaf	132.177
SRR9715739	Root	135.927
SRR9715742	Root	165.422
SRR9715743	Root	163.176

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	341.839
SRR8749028	MeJA induced 9h	183.675
SRR8749029	MeJA induced 9h	217.433
SRR8749030	Uninduced	50.301
SRR8749031	Uninduced	31.357
SRR8749032	Uninduced	34.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	221.631
SRR8400027	Control - Root	198.157