Gene detail

Gene detail information of Glyur000056s00004158

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G28260.2	5.00E-148	Telomerase activating protein Est1
NR	KEH36552.1	0	telomerase activating protein Est1 [Medicago truncatula]
Swissprot	tr\|Q9FZ99\|SMG7L_ARATH	0	Protein SMG7L
trEMBL	tr\|A0A072V3Y4\|A0A072V3Y4_MEDTR	0	Telomerase activating protein Est1 {ECO:0000313\|EMBL:KEH36552.1}

Sequence

Transcript Sequence

>Glyur000056s00004158.1
TCTAGCTATCTATTGACGAGTAGAAAATATGTTTTATATCAAAAATGCCGAAATCTGGTTTAAGATTGGTTTGTCTTNTATTCATCTTCCGCCTCATCATAAAATCCATAACATAATCCTACCTTTTACTTTGTCTGTTTCACAACTGAAACCACTGCTGTTGGTGGTCCAATTCTTCTTGCTTCTTCCCTTCTCCGCTTCTATCTCATAGGTGTCTCTCTCTACCTATGTGAATGCTGCTAACAGAGCTTTGGATAATTTGGGCTCAATTTCTGGTTAGCTAGCTGCAGTTGGAATTGTCTACTCAAGAATATCCAGTTCATTAGATGCATTACCTTTGAAGGAAGCCCTTCAGTTTCGACCATGACAACTGATCCATCTCTTTCTGCTGGAATTCATACTAAAGAAGTTCTCTTTGAGATTGGGAATTCTGAAAAGCAATTGTGGGCATTGATCCATTCTAAAGGCCTTCTGCACTCGGATGCTCAAGACTTGTACCGCAAGATCCGGTCTAGTTATGAGAAAATAATCCTGAATAATTGCATGCATTCAGAACTTCAGGATGTTGAATACTCTTTGTGGAAGCTTCACTATAAGCATATCGATGAATTTCGCAAAATAATAAAGAAAAGCTCTGGCGATGTAGAGAGCAAAAAATCAGGAAGGCCACAAACTGGTATTGTGCAGAGAACCAATGACAACCATTTTAAGTCATTTAAGTTGTTTTTGTCTGAAGCTTCTGAATTTTACCAAAATCTGATTGTAAAACTCAGAAAACATTATGGAGTTCCAGAAGAGGCATTGTTTTATAAAAAGGGTTGGATCTCTACTTCTGTTGAACCAGATGTCATGGTGAAATGCCAATATTTATGTCATCGCTGCTTAGTTTGTATGGGGGATCTTGCCAGGTACAAAGAACAATGTGAAAACCCTGAGATTCAAAATCATAATTGGTCAGTTGCTGCCACCCATTACTTGGAAGCAACAAGAATTTGGCCAAATAGTGGGAACCCCCAAAATCAGTTGGCTGTACTGGCAACATATATNGGTGATGAATTTCTTGCTCTATACCACTGTGTACGAAGTTTAGCAGTTAAGGAACCTTTTCCTGATGCCTGGAACAATCTTATCTTGTTGTTTGAAAAGAACAGGTCATCTTCTCTGCAACATGTTTCTGGCGAAGTCTTCTTTGATTTCTTTAAACCTTCTGAAAGAATCGGTGAAGAGACGAAGGCGCAACTGAAAGATGATTGGTCAAACTGCATTAAATTTGAAGGCGAAAGTAATCAGTTTTCCGACAAAAAGTTATGGTCTCTTGTGGTCAGAATGATAAGCTTNCTCTTCATAACATCAAGTTTCGAGGAATTCTCTATTACATTGGCATCTACTATTGGAGAGTTGGATAAAATGATGAAGCTGGAAGACATAGAACTAAGGACCATGTTGGAGTCCTATACTCAANTGGATTTAGCCAGAAGAGGCCCTTTCCGAGCCATACAAGCAGTTTCTATTCTCATATTTTCCCTAAAGAATCTAATGGATAAACTTGAAAAAAATGAATCAGAAGACAAAAATGATAGGCAGTTGATGCAGCTAGCATTCGCTGCTGCGTTCATCTTCATGGGATGTTTCATTGAAAGATGCCTAAAGGCTAGTTCTTTGTATTGTTGCCCCTTGTTTCCTTCTGTGCTTGTTTTTGTCGAGTGGTATTCAAGCGTGCTTGATGCAACTGAAGTACATACAACTGATCGAAAGAGTAGAAGAGCCATTTCTTACTTTTTTGATGTGTTTGTTGAACTTCTAAATAAACTAAATGACAATAGAAAGGAAACCAAAAGGCTTCTTGATGGGACCCCTCTATGGGAGGATTATGAGTTGAGGGGATTTGTACCTATATCTTGTTCACATTTTTCATTAGATTTCTGTGGNAATTGGGAACACATAGACAATTTTGAAAGTGGAATGGAATTNCGTGCCGAGCGCATCAGAGAAGCAGCAATGAAGATTGCTAGCAGATCAAAGCATTTGCAGAGGTGGATTACATGTGATGAATTAGGAAGAAGATTTTATGTGGCTAGATCAGATGAAAATCATGGAAAGAAAAAAGCAGAAAATATGCAGTCCAATGACAATAATACAAGAGGGGAAGTGCCTACTCAGCAAACTAACAAAGACAGGGGGGAACATGACAAAAGGATGACAGAGGACAACCCAAGTAGCTCCAACACCAATGGAAAATCTTTTGTGGTGGAAGAAGAAGAAGTTATTCTCTTCAGGCCTCTCACAAGGTATAATTCAGCACCATCTTACCCCTCTAACTCAAGTTATGAGCAGATATCACCAAAAGACAGTGATGACCAAAGCTTGCCATCCGATGATTGTTTGCGCCGTGCTACATCTCTGCTTATGGCACAAAACCCAACTCAAACTCAAAGTGATCCATGGGAATTCCAGGGAAGCATTTCGAATTTCAGGAGTGACAAATCTCTTAAACAGCAAGAACCTTCAACAAAGGAATCAAATGCGCACACTTTTTCAGAAGCCCCTATCTCTGCTGGCCCTCCCTCGCTCAATGCTTGGGTCCTTGATAAAGAAAGCNTGAACAACAATAGAAAAAATGGGACAATGGGTCTTATGGAGCACAGGTTGCAGCCCATTGATGAAATAGCTTCTTCATCTTTGGCCGGTCTATCCATCAATATAAATGAGAATTCAGTCATCAGTTCAGTGAATGAATCTTCACACTTCAGTTCCTCTTCTGCCACATATTCTGTTCCAGTACCTTCTGCTCCTTTGTTGCCTGATAATGCTGCCTGGTTTACTGATGTACAATCTAGTTCATCTGCTCCAAAATTTCCAGAAAACTCATCACCAGTAAGTGGTTACTCGGATTGGAGTTCTACTTATGGACCACCAGGATATGATCCTAGATTTCCGGTTTCTTTCGGTGGNTACCCTCCACCTGGCCTATTGACTTCTTCAGAATGGCTGCGTTGGTACAGAGAGAATTACAAACCTGAGAGGGCCAACAATTATATGCAGCCTACTTATTTGAATACTCCTGGTCCTGGAAATCATGAAAACTTCCTCTATCATGATACTTACAACAGGTTTGNTCAACTTGATAGATGGGGCAATCCTTTGCCTTCTAACCAGTACACATATATGGAGTCCCCAGGGCCCCCACCATTCCAGCCAGGTTTTCTTGGTGCAGGTGAACACAAAGCTAGTGTCTTCAACAATTTTCAAAGACCAAGCCCTTATGGGTGTGGTGCTGTGACAGAACTGAGAAATGAACCACAGTCTCTTCTGGAGTGCCTGAAGGAGAAGGAATGGCGACTCCAGCGAGATCCCAACCTCAGAGGGCCTACATTCACTGGAAAATAGAACTCCTCATCTTGAAACTTTTGTTTCACAGATCATTCCATTATTGTACACCTTGGTGAGCACTTATGTTGCATAAGAAGCATCAAACAGTATTAATGTATGCACATATGCATATAGATGTATCATTCATTTCCTGAATGAATTGAGGAATTCTAAAGAAAGTGGATGAATTGAGATAGCCTCCATTCAGCCACTGGTCTAGGATATGTAAAATATGTAGAGTTTAAATTATTAGAAGAGGAAATTCTCATCCCCAGAAGTGGGTACATGATTCGTGGAAACAAAACAAGCATACTTGCCATGGTTGGTGAATGGTGATATACTATGAGTGAGATTACATGTGGTGAGATAAAAAGTGCAAGGGAATTATATGANGCCAGATTTATGCGTGAGTTGAATGTATTATATCCAAAAATTACTGCTTAGGACGGCCAGGTAAAAAAGTTCGTACTATTGTTTTGGAAGTAAANAAAATTAAGTAGAAGAATAAAATGGACATGAGAACAAAGAT

Protein Sequence

>Glyur000056s00004158.1
MTTDPSLSAGIHTKEVLFEIGNSEKQLWALIHSKGLLHSDAQDLYRKIRSSYEKIILNNCMHSELQDVEYSLWKLHYKHIDEFRKIIKKSSGDVESKKSGRPQTGIVQRTNDNHFKSFKLFLSEASEFYQNLIVKLRKHYGVPEEALFYKKGWISTSVEPDVMVKCQYLCHRCLVCMGDLARYKEQCENPEIQNHNWSVAATHYLEATRIWPNSGNPQNQLAVLATYXGDEFLALYHCVRSLAVKEPFPDAWNNLILLFEKNRSSSLQHVSGEVFFDFFKPSERIGEETKAQLKDDWSNCIKFEGESNQFSDKKLWSLVVRMISXLFITSSFEEFSITLASTIGELDKMMKLEDIELRTMLESYTQXDLARRGPFRAIQAVSILIFSLKNLMDKLEKNESEDKNDRQLMQLAFAAAFIFMGCFIERCLKASSLYCCPLFPSVLVFVEWYSSVLDATEVHTTDRKSRRAISYFFDVFVELLNKLNDNRKETKRLLDGTPLWEDYELRGFVPISCSHFSLDFCGNWEHIDNFESGMEXRAERIREAAMKIASRSKHLQRWITCDELGRRFYVARSDENHGKKKAENMQSNDNNTRGEVPTQQTNKDRGEHDKRMTEDNPSSSNTNGKSFVVEEEEVILFRPLTRYNSAPSYPSNSSYEQISPKDSDDQSLPSDDCLRRATSLLMAQNPTQTQSDPWEFQGSISNFRSDKSLKQQEPSTKESNAHTFSEAPISAGPPSLNAWVLDKESXNNNRKNGTMGLMEHRLQPIDEIASSSLAGLSININENSVISSVNESSHFSSSSATYSVPVPSAPLLPDNAAWFTDVQSSSSAPKFPENSSPVSGYSDWSSTYGPPGYDPRFPVSFGGYPPPGLLTSSEWLRWYRENYKPERANNYMQPTYLNTPGPGNHENFLYHDTYNRFXQLDRWGNPLPSNQYTYMESPGPPPFQPGFLGAGEHKASVFNNFQRPSPYGCGAVTELRNEPQSLLECLKEKEWRLQRDPNLRGPTFTGK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	319125	324906	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004158.1	PF10374.4	EST1	66	190	1.50E-15
Glyur000056s00004158.1	PF10373.4	EST1_DNA_bind	200	515	2.20E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.155
SRR1783600	control	13.364
SRR1783602	moderate drought stress	13.368
SRR1811619	moderate drought stress	13.341

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.085
DRR006520	Root Summer glycyrrhizin high producing strain	16.890
DRR006521	Root Winter glycyrrhizin high producing strain	20.749
DRR006522	Root Winter glycyrrhizin high producing strain	20.453
DRR006523	Root Summer glycyrrhizin low producing strain	18.384
DRR006524	Root Summer glycyrrhizin low producing strain	18.221
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.389
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.440

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.747
SRR2868004	Drought Stress (root)	13.474
SRR2967015	Control (root)	19.113

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.753
SRR9715740	Leaf	7.795
SRR9715741	Leaf	6.529
SRR9715739	Root	1.638
SRR9715742	Root	10.089
SRR9715743	Root	7.799

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.779
SRR8749028	MeJA induced 9h	14.868
SRR8749029	MeJA induced 9h	6.773
SRR8749030	Uninduced	10.390
SRR8749031	Uninduced	14.093
SRR8749032	Uninduced	9.128

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.977
SRR8400027	Control - Root	14.253