Gene detail information of Glyur000056s00004154 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G28280.2 | 4.00E-52 | VQ motif-containing protein |
| NR | XP_004485790.1 | 2.31E-93 | PREDICTED: uncharacterized protein LOC101497978 isoform X1 [Cicer arietinum] |
| trEMBL | tr|M5WPI4|M5WPI4_PRUPE | 9.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:EMJ15156.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 305103 | 305777 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000056s00004154.1 | PF05678.9 | VQ | 44 | 71 | 1.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 87.238 |
| SRR1783600 | control | 89.922 |
| SRR1783602 | moderate drought stress | 89.825 |
| SRR1811619 | moderate drought stress | 90.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 212.738 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 207.359 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.911 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.019 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 345.227 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 337.007 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 109.684 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 118.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.542 |
| SRR2868004 | Drought Stress (root) | 34.082 |
| SRR2967015 | Control (root) | 67.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 174.474 |
| SRR9715740 | Leaf | 95.736 |
| SRR9715741 | Leaf | 135.438 |
| SRR9715739 | Root | 243.130 |
| SRR9715742 | Root | 192.682 |
| SRR9715743 | Root | 197.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 33.895 |
| SRR8749028 | MeJA induced 9h | 19.379 |
| SRR8749029 | MeJA induced 9h | 12.048 |
| SRR8749030 | Uninduced | 17.298 |
| SRR8749031 | Uninduced | 0.733 |
| SRR8749032 | Uninduced | 2.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 44.586 |
| SRR8400027 | Control - Root | 77.048 |