Gene detail

Gene detail information of Glyur000056s00004150

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32480.1	8.00E-70	Protein of unknown function (DUF506)
NR	XP_003593582.1	4.87E-164	hypothetical protein MTR_2g013780 [Medicago truncatula]
trEMBL	tr\|G7IPT8\|G7IPT8_MEDTR	2.00E-164	DUF506 family protein {ECO:0000313\|EMBL:AES63833.1}

Sequence

Transcript Sequence

>Glyur000056s00004150.1
GCAGAAAAGAAAAGGGAGAGAGTCAAACACAGAGACAACTTTAATAATCATGGGTGGAACCTCTCTGGCCGGAAAAGTGACAAGGTTTCTGGCGAGTCGCCGCCAGGACAGCCTCGAGTTTGTGTATTCTGAAGATCAGCGACCTAATTCAGACACGAGTGTTGGCGATGTTGAGTTTGAGTTTCTTGATGACGGAGAGCTTTTGCTGGGCCAAAGTGCTAGCAGCGATGAGTGCAATAACCACCCTAATAATGAAATGGATTTGGATGAAGAGGACGAGGCAGAGAAGGATCATGGTGGTAACGTTGAGGCGAATCGAAGCTTTTGGGACAACCAACACCAGGTTTTGCAGGCCAATATATGCAGAACCAGTTCATTGGAGTCAAGGATAAGGCAAGCCACGAAAGAAGCGCTTCAGGAGATACAAAGCGCAGAAACCGTGTACTGTGGTTGCAGCAGCAGATCACAGATGGGCGCAGCCACCGCTTGCCGAAACTGCTTAATGAGGGAAGTTTCTAGGCGGCTTCAGAAAGCAGGATTTAATAGCGCAACTTGTAGAACAAAATGGAGAAGCTCGACTGATATTCCATCAGGGGAACACAGTTTTTTGGATGTGATAGACAATACAAGCTCAAAGAAAGGGGAGGTGAGGGTGATGATAGAGCTGAATTTCCGAGCAGAGTTTGAGATGGCGAGGGGAAGCGACGAATACAACCGACTCGTCCGGAGGCTACCGGAGGTGTTTGTGGGGAAAGTAGAGAGGTTGAGCAACCTGATTAAGATCTTATGCATGGCAGCCAAAAGGTGCATGAAGGAAAAGAAGATGCACATGGGGCCATGGAGGAAGCATAGGTACATGCAAGCTAAATGGTTAGGACCATGTGAAAGGAACACTTCAAATACTCCACTCTCAATGGGATCATATAATGAGAGGATAATAACAAGGCCAAAGCCAAAGGCATCTTTGTTGACCGTTGACCTCTTAGAGAAGCTTCCCAACATGCACTGCACTGCAGTTGAGGTTGTGTAGTTGTAAGAGGAAGACCAAAGCCGAGAGTTTTGTCTCCCCGTTTTGTTTTGGTAAATTTCATTTTTTTTTTCTTTTTTCTCTCCCCACCCTTTTCTCGTTGGCGAAAACTAAAAGAGTGATTCGCAAATGTCGCCCCATGTATACATGTTTGTAAAAATAATTTATAGAAATGGAAGCGCAGTGATCAAAGCTGCTGTTAANGTTATTGGGTCAACACGTATAATTTGCTCAAATATATGCAAATTTCACTGTGATATGCCTGACTTGAGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	278930	281765	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004150.1	PF04720.7	DUF506	44	280	7.70E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.215
SRR1783600	control	29.376
SRR1783602	moderate drought stress	65.157
SRR1811619	moderate drought stress	65.002

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	106.867
DRR006520	Root Summer glycyrrhizin high producing strain	103.916
DRR006521	Root Winter glycyrrhizin high producing strain	23.861
DRR006522	Root Winter glycyrrhizin high producing strain	22.501
DRR006523	Root Summer glycyrrhizin low producing strain	25.109
DRR006524	Root Summer glycyrrhizin low producing strain	24.634
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.136
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.084
SRR2868004	Drought Stress (root)	63.171
SRR2967015	Control (root)	73.595

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.331
SRR9715740	Leaf	6.986
SRR9715741	Leaf	10.512
SRR9715739	Root	12.645
SRR9715742	Root	14.091
SRR9715743	Root	13.157

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	140.417
SRR8749028	MeJA induced 9h	306.051
SRR8749029	MeJA induced 9h	201.389
SRR8749030	Uninduced	80.650
SRR8749031	Uninduced	466.899
SRR8749032	Uninduced	254.057

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.518
SRR8400027	Control - Root	12.985