Gene detail

Gene detail information of Glyur000056s00004149

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26250.1	4.00E-160	3-ketoacyl-CoA synthase 10
NR	XP_003547147.1	0	PREDICTED: 3-ketoacyl-CoA synthase 10-like [Glycine max]
COG	YP_003590265.1	2.00E-13	chalcone and stilbene synthase domain-containing protein [Kyrpidia tusciae DSM 2912]
Swissprot	tr\|Q9LLE8\|KCS10_ARATH	0	3-ketoacyl-CoA synthase 10
trEMBL	tr\|I1MEJ6\|I1MEJ6_SOYBN	0	3-ketoacyl-CoA synthase {ECO:0000256\|PIRNR:PIRNR036417}

Sequence

Transcript Sequence

>Glyur000056s00004149.1
TCTCTTCCTAAGGAGAACCGACTCGGATGCACCAAACTGATTAACAGAATTTTTATTATTAAACAAAAGGATGAAAATTTGATATGTACCTCACTCCCTCTGGCATACAATTTCAATGGTGCTGCAAATCTGCTGCTCATGCGCATTCATGCACAACATGCCTATTCTGTTTGCATCCTCCGTAAAATCCTTAGCATCACTTCCANCATTTACCATGCCATCAACCTATCTCTCCAATCTACATTCCTATATATGTGTAATATACCCCATCAAGCTTCTTTGCCTTCCTATACTTTTCAAACGTTGCTATTTNGTTTCCCACTTCTCAATTCAATATGAGCATGCCAATCAAGCTGCATTAGTTGATTAAAATCCATCCATATATTTGCCTTTANTTCCCCACTTCTTTCTTCGATAAAAGTTACTCAGTTCATTGTAACAGAAAAATTTCCCTCATGTCAAATGAAAGTGAGCAGTTTTCAACAGAGATTGTGCAGAGGGGTGTTGAGAACTCTGGCCCAAATGCTGGCTCTATTTCTTTCTCTGTGAGAGTACGGCCTAGGCTACCAGATTTCCTTAGTTCAGTCAATCTCAAATATGTGAAATTGGGTTACGGCTACCTCATTANTCATCGCTTGTACTTATTGCTGGCACCACCTCTGCTTGCAGCCTTGGTTCATCACANTGCAAAGTTCACTTGGGAAGACCTCTATGAGAAGAAATTTGACTTCACTGAGACTCTATTTATACTGGGACTTTTGTGCCTAATGCTATATTTTTATCTTGATTCTACACCCAGCTCTACCTATTTGCTTGATTTCTCATGTTTTCGCCCTTCAAATGAATACAAGATATCTAAGGCAGAGTTCATTGAGTTAGCTAAAAAATCTGGGAATTTCAANGATACTGCCATTGAGTTTCAGGAACGAGTTCTTAAGAAATCTGGCATAGGAGATGAGACCTACTTGCCAAAAGGAGTTTTTCGCCCGGGCTATAGATCCTCACTGAAAGATGGCAGGGAAGAGGTATCAATGGTGATGTTTGGGGCAATAAAGGACCTTCTTGCAGCCACAAAAGTAAAACCAAAAGATATCAGAATCCTGATAGTAAACTGTGGGATACTAAATACCACCCCATCACTCTCATCAATGGTAATAAACCATTTCAAGCTTAGGCATGATATCCATAGCTTCAACCTTGGTGGGATGGGTTGTGCTGCTGGGATCACAGCCATTGATCTAGCTAAAGACCTTTTGGATGCATATCCAAGATCTTATGCACTGGTGGTTAGCACAGAAGCTGTGAGCTATTCATGGTACAGTGGCAATGACACTGACATGCTGCTCCCTAATTGCTTCTTTAGAATGGGGGCTGCAGCCATCATGCTCTCAAATTTTCGCCTAGATAGATGGCGTGCCAAGTATGAACTCAAACAGCTGGTGGGAACTCACAGAGGAATGGACAACAAAAGCTACAGAAGCATACATCAAAGGGAAGATAGTGAAGGGAAGAGGGGACTTTCTGTGAGNAAGGATGTGATTGAGGTTGGAGGCAATGCACTAAAGGCCAACATAACCACACTTGGCCCACTGGTNCTACCAGTTTCAGAGCAGCTCCANTTCTTCACCAATTTGCTCTTCAAGAAGAAGGAAACGAGGCCATACATTCCAGATTNCAAGCTGGCATTCGAGCACGTGTGCGTTCTGGCAACGAGCAAGAAAGTTCTTGACGAGATCCAGAAGAATCTGGAACTCACGGAGGAGTACATGGAGGCATCGAGGAAGACGTTGGAGCGATTTGGCAACACGTCTAGCAGCAGCAATTGGTATGAGCTGGCGTATCTTGAGTTCAACTCGAGGGTCAAGAAGGGTGATCGTGTTTGTCAGATAGCTCTTGGGGCTGGCTTCATGTGTAACAGTGTTGTTTGGAAGGCACTGAGGAATGTTGGGAGACCCAAACAGAGTCCTTGGGTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	270446	273058	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15397	KCS	EC:2.3.1.199	Fatty acid elongation	map00062

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0008152 metabolic process

GO:0008610 lipid biosynthetic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004149.1	PF08392.7	FAE1_CUT1_RppA	113	397	1.20E-116
Glyur000056s00004149.1	PF08541.5	ACP_syn_III_C	413	492	1.10E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.070
SRR1783600	control	3.076
SRR1783602	moderate drought stress	10.588
SRR1811619	moderate drought stress	10.674

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.455
DRR006520	Root Summer glycyrrhizin high producing strain	5.186
DRR006521	Root Winter glycyrrhizin high producing strain	0.007
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.174
DRR006524	Root Summer glycyrrhizin low producing strain	1.236
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.756
SRR2868004	Drought Stress (root)	0.864
SRR2967015	Control (root)	0.604

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.433
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.090
SRR9715739	Root	1.634
SRR9715742	Root	1.742
SRR9715743	Root	2.646

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.359
SRR8749028	MeJA induced 9h	0.179
SRR8749029	MeJA induced 9h	0.283
SRR8749030	Uninduced	0.755
SRR8749031	Uninduced	0.325
SRR8749032	Uninduced	0.605

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.880
SRR8400027	Control - Root	1.033