Gene detail

Gene detail information of Glyur000056s00004146.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17420.1	2.00E-105	lipoxygenase 3
NR	ACD43484.1	6.64E-144	lipoxygenase 2 [Olea europaea]
Swissprot	tr\|Q9LNR3\|LOX3_ARATH	2.00E-138	Lipoxygenase 3, chloroplastic (Precursor)
trEMBL	tr\|E3NYV2\|E3NYV2_OLEEU	2.00E-144	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000056s00004146.2
ATGGAGCCATTCATCATAGCAGCTCATCGCCAACTGAGTGTTATGCACCCTGTTTTCAAACTTCTGAAGCCTCATATGAAACACACACTACAGATAAATGCATTGGCTCGTGAGGCTCTCATTAACGCAGGTGGCATCATTGAGTCTGACTTTTCTCCCGGTAAATACAGTACACAGATTTTCTCAGCTGCTTACAGAGATTGGTGGCGTTTTGACATGGAAGCCCTTCCTGCTGACCTTATTAGAAGGGGACTGGCAGAACTTGACCCAACACAGCCCCATGGGCTAAAACTGCTGATTGAAGATTACCCTTATGCAAATGATGGGCTTCTTATCTGGTTTGCTTTGGAAAACTTCGTTAGAACTTATGTGAACTACTACTACTGTGATGCGCTCATGGTCCAGTCAGACAGTGAACTCCAAGCGTGGTATAATGAGGTTATCAATGTGGGGCATGCTGATCATGCAAATGCAAGTTGGTGGCCCACACTCTCCACTCCTACCGACCTTAACTCAATACTAACTACACTCATATGGGTTGCTTCAGTCCAGCATTCAGCAGTGAATTTTGGGCAGTACCCCCTCGGCGGGTATGTCCCAATGCGCTCCCCGCTTATGAAGAAGCTACTACCCAAGGAGGAGGATCCAGAGTACAAAGATTTTGTGGAGAACCCAGAAGGATACTTGTTGTCTTCCTTGCCAGATTTGTTTCAAACCACCAAGTTCCTGACAGTGGTTAACATACTTTCTCAGCATTCGCCAGATGAAGAATACATAGGGCAGAGAAAGGACCTGTCAGATTGGGCTGGTGACCCTGAAATCATAGAGGCATTCTATAAGTTTTCCATAGATCTAANGACAATAGAAAAGGAGATTGAGAAGAGAAATAGAGATCCAAAACGTAGAAATAGATGTGGTGCAGGTATTCCACCATATGAGTTGCTCATAGCCAGCTCTGGTCCTGGAGTTACTTGTAGAGGGGTGCCTAACAGCATAAGTATTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	244297	255318	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004146.2	PF00305.14	Lipoxygenase	1	316	2.80E-120

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.530
SRR1783600	control	0.575
SRR1783602	moderate drought stress	1.513
SRR1811619	moderate drought stress	2.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.653
DRR006520	Root Summer glycyrrhizin high producing strain	0.629
DRR006521	Root Winter glycyrrhizin high producing strain	2.853
DRR006522	Root Winter glycyrrhizin high producing strain	2.767
DRR006523	Root Summer glycyrrhizin low producing strain	0.790
DRR006524	Root Summer glycyrrhizin low producing strain	0.698
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.036

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.471
SRR2868004	Drought Stress (root)	0.517
SRR2967015	Control (root)	0.677

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.609
SRR9715740	Leaf	1.797
SRR9715741	Leaf	4.448
SRR9715739	Root	0.161
SRR9715742	Root	0.687
SRR9715743	Root	0.750

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.074
SRR8749028	MeJA induced 9h	9.143
SRR8749029	MeJA induced 9h	3.044
SRR8749030	Uninduced	2.459
SRR8749031	Uninduced	3.280
SRR8749032	Uninduced	2.209

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.350
SRR8400027	Control - Root	0.328