Gene detail

Gene detail information of Glyur000056s00004140.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G04970.1	glucan synthase-like 1
NR	XP_004485779.1	PREDICTED: callose synthase 11-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9S9U0\|CALSB_ARATH	Callose synthase 11
trEMBL	tr\|A0A072V5B8\|A0A072V5B8_MEDTR	Callose synthase-like protein {ECO:0000313\|EMBL:KEH36548.1}

Sequence

Transcript Sequence

>Glyur000056s00004140.1
ATGTATCTGAGACAGCGCCCCGTCGCCACGCGCGGCGGCGCCGTGAACCAGCAGCGGCCTCCTCCGCCGTTGAACTCCGTCTACAATATTATACCGGTGCACGACCTCCTTACGGACCACCCTTCCCTCCGGTACCCGGAGGTTCGCGCCGCCGCCGCCGCCCTCCGCACCGTCGGGGACCTGCCGAAGCACCGTTTCATGGCGTGGGAACCGGGCATGGACCTCTTGGACTGGCTTCGGTTACTGTTCGGGTTCCAGTTCGACAACGCGCGGAACCAGAGGGAGCATTTGGTTCTCCACCTCGCCAACGCGCAGATGCGCCTCGATCCTCCCCCCGCCGTCGTGGACGCCCTCGACGCCGGCGTACTCCGGCGGTTCCGGCGGAAGCTCCTCCACAACTACACCGCGTGGTGCTCGTTCCTCGGCCTGAAATCGAACGTGGTACTCCCTCGCCGGCGAGACCCAACGGATCTCCGCCGCGAGTTGCTTTACGTTTCGCTGTTCCTCTTGATTTGGGGCGAGGCCGGTAACCTCCGTTTTGTTCCGGAGTGTGTTTGCTATATTTACCATTTCATGGCGAAGGAGCTTAATCATGTTCTCGAGGAGCGCATAGACCCTGATACCGGTCGTCCCTTTTTGCCTACGGTTTCCGGTGACTGTGGGTTTTTGAAGTCTGTGATTATGCCTATTTATGACACGATTAAGGTTGAGGTTGATAGTAGCAGAAATGGAAAGGCTCCACACTCTGCGTGGAGGAACTATGATGACATAAACGAATACTTCTGGAGCAGGAGGTGTTTGAAGAGGCTGGGTTGGCCTCTGAATTTCGAGAGTAGTTTCTTTGGGACTACTCCGAAGGAGAAGCGTGTGGGGAAGACGGGGTTCGTGGAACAAAGGTCATTCTGGAATGTTTACAAGAGCTTCGATAGGCTCTGGGTCATGCTGATTCTGTTCTTGCAGGCTGCTATTATTGTTGCTTGGGAGGGAACCACTTATCCCTGGGAAGCATTGGAGGGAAGGGATGTCCAGGTCAAAATGTTGACTCTCTTTATTACTTGGAGTGCTCTGAGGTTGCTTCAATCGGTGCTCGATGCCGGGACTCAGTATAGCTTGGTTACTAGGGAGACTGCGTGGCTTGGGGTGAGGATGGTGCTCAAGAGCATGGCTGCCATAACGTGGACTGTTTTGTTTGCNGTCTATTATGGGATAATTTGGATTGAGAAGGGTTCTAATCCAACTTGGTCTAATGCGGCAAATCAGAGGATTATTACATTTCTTAAGATTGTCTTCTGCTTTCTTATCCCGGAAATGTTGGCATTGGTACTATTCATTGTGCCATGGTTGCGGAACTTCATCGAGGAATCTGACTGGAGGATAGTATACTTGTGGACGTGGTGGTTTCATTCCCGGATTTTCGTGGGTCGCGGGGTGAGGCAGGCGCTTATAGATAATGTAAAGTATACTATTTTCTGGATAGCAGTTTTGGCTTCAAAATTTTCATTCAGTTATTTTGTTCAGATCAAGCCTCTAGTTACTCCAACAAAGGCTCTTTTGAAGCTCCACGTCGTTAATTATAGATGGCATGAGTTTTTCAGTAACACCAACAGAATGGCAGTTGTCTTCATGTGGTTACCTGTTGTGCTGATATATTTCATGGACCTGCAAATATGGTATTCGATTTTCTCTGCCTTTGTTGGTGCAGTGATTGGTCTGTTCTCGCATTTGGGTGAAATTCGGAATATCTCACAACTCAGGCTTAGATTTCAGTTCTTTGCCAGTGCACTGCAGTTCAGTCTGATGCCAGAGGAGAAGCTGCTAAGCCAGCAAGCAACACTGCTAAAGAAGGTTCGCGATGCCATCCACCGGTTCAAACTGCGCTACGGACTTGGTCAGCCCTACAATAAGATTGAATCAAGCCAGGTGGATGCTACCAGGTTTGCCTTGATATGGAATGAGATTATCATAGCTTTCAGGGAGGAAGATATCATCAGTGATCGAGAACTTGAGCTCTTGGAACTGCCGCCAAATTGCTGGAATATTAGGGTTATTCGATGGCCATGTTTCCTTCTCTGCAATGAGCTACTACTTGCTCTCAGTCAGGCAAAAGAGCTGGAAAATGAGTCTGACATGTCACTTTGGTTGAAAATATGCAATAATGAGTATCGCCGGTGTGCTGTCATTGAAGCTTATGATAGCATTAAANACGTATTTCCCATGATTCTTAAAGTTGATAAAGAAGAGTTCTCCATTGTGACTAATATATTCAGGGAAATAGACTACTACATTCAGATGAGGAAGTTAACGGANGTGTTCAAGCTGTCTCTGCTGCCAGAGCTACATGCTAAGGTGAGAGAATTTGTTCGGCTTTTGATACAACCGAAGAGAGATATGGATAAGGCTGTAAATTTGTTGCAAGCCTTGTATGAATTGTGTGTTCGAAGATTTCCAAAGGTGAAGAAGACCAGCCCCCAGCTGATTGCGGAAGGTCTGGCACTACAAAGTCCAAAACCTGATGGGGGACTGCTCTTTGAGAATGCTATTGAGTTTCCCGATGCTGGAGATGAAATCTTTACTAGGCAGCTCAGAAGGTTGCATACAATTCTTACTTCAAGAGACTCAATGCACAATGTTCCATTGAATCTTGAGGCGCGACGACGGATTGCTTTCTTTAGCAATTCTTTGTTTATGAACATGCCTCGTGCTCCCTGTGTTGAAAAAATGTTGGCTTTCAGTGTTTTGACCCCATATTATGATGAGGAAGTTGTCTATGGAAAAGAGGCTCTGCGGAAGGAGAATGAGGATGGCATTACTACTTTGTTTTATTTGCAGAAGATTTATGAAGATGAATGGAATAATTTTGTGGAAAGGATGCATAGAGAGGGCTTAAAAGATGAGGATGATATCTGGACAGAAAAAGCCTGGGACCTCCGCCTTTGGGTATCTTATAGAGGTCAAACACTATCTCGCACAATCAGGGGGATGATGTATTATTATAGGGCCCTTAAGATGCTTGCCTTTCTTGATTCAGCGTCTGAGATGGACATAAGAGAGGGATCCGAGCATATTGTTTCACATGTTTCAACAAGCCAACTCAGCAGTTTGAATGGTCCACCTTCAGATGGGCCTCGATCTCTACGGAAAATGAGAAGGGCAGATAGCAGTGTGTCACTGTTATTCAAGGGACATGAATTTGGGAGTGCACTGATGAAGTTCTCGTATGTGGTGGCATGCCAGCTGTATGGGCGCCACAAGGCAGACAAGAATCCTCGAGCTGATGATATACTGTATTTGATGAAAAAAAATGAGGCCCTTCGAGTAGCATATGTTGATGAGGTTACTTTGGGGAGGGAAGAGATTGAATATTACTCTGTTCTGGTGAAGTTTGATCAGCAATTGCAGAGTGAGGTTGAGATTTATCGGATCAGGTTGCCTGGTCCTTTAAAAGTTGGTGAAGGGAAACCAGAAAACCAGAATCATGCCATAATCTTTACTCGGGGTGATGCAGTTCAGACCATTGATATGAATCAAGACAATTATTTTGAGGAGGCTCTCAAAATGCGGAATCTGTTGGAGGAGTTATACAATGTTGAAGACCTAAAGGTTAGCCTTCTTTCCGTGACAGTGGTGGCTTATGTGTACAATAACGTTGTGAACCTCTGTAGTTTAGCATTAGAGGAAGGAATATCAGGTGATTTTCCCATTCGACTTGCTGTATATGTTTGTCCATATCTAGTGAAACTCACTCTAACCATATACTCCGTCGCCTCTGTATCAACGATTTTCTAG

Protein Sequence

>Glyur000056s00004140.1
MYLRQRPVATRGGAVNQQRPPPPLNSVYNIIPVHDLLTDHPSLRYPEVRAAAAALRTVGDLPKHRFMAWEPGMDLLDWLRLLFGFQFDNARNQREHLVLHLANAQMRLDPPPAVVDALDAGVLRRFRRKLLHNYTAWCSFLGLKSNVVLPRRRDPTDLRRELLYVSLFLLIWGEAGNLRFVPECVCYIYHFMAKELNHVLEERIDPDTGRPFLPTVSGDCGFLKSVIMPIYDTIKVEVDSSRNGKAPHSAWRNYDDINEYFWSRRCLKRLGWPLNFESSFFGTTPKEKRVGKTGFVEQRSFWNVYKSFDRLWVMLILFLQAAIIVAWEGTTYPWEALEGRDVQVKMLTLFITWSALRLLQSVLDAGTQYSLVTRETAWLGVRMVLKSMAAITWTVLFAVYYGIIWIEKGSNPTWSNAANQRIITFLKIVFCFLIPEMLALVLFIVPWLRNFIEESDWRIVYLWTWWFHSRIFVGRGVRQALIDNVKYTIFWIAVLASKFSFSYFVQIKPLVTPTKALLKLHVVNYRWHEFFSNTNRMAVVFMWLPVVLIYFMDLQIWYSIFSAFVGAVIGLFSHLGEIRNISQLRLRFQFFASALQFSLMPEEKLLSQQATLLKKVRDAIHRFKLRYGLGQPYNKIESSQVDATRFALIWNEIIIAFREEDIISDRELELLELPPNCWNIRVIRWPCFLLCNELLLALSQAKELENESDMSLWLKICNNEYRRCAVIEAYDSIKXVFPMILKVDKEEFSIVTNIFREIDYYIQMRKLTXVFKLSLLPELHAKVREFVRLLIQPKRDMDKAVNLLQALYELCVRRFPKVKKTSPQLIAEGLALQSPKPDGGLLFENAIEFPDAGDEIFTRQLRRLHTILTSRDSMHNVPLNLEARRRIAFFSNSLFMNMPRAPCVEKMLAFSVLTPYYDEEVVYGKEALRKENEDGITTLFYLQKIYEDEWNNFVERMHREGLKDEDDIWTEKAWDLRLWVSYRGQTLSRTIRGMMYYYRALKMLAFLDSASEMDIREGSEHIVSHVSTSQLSSLNGPPSDGPRSLRKMRRADSSVSLLFKGHEFGSALMKFSYVVACQLYGRHKADKNPRADDILYLMKKNEALRVAYVDEVTLGREEIEYYSVLVKFDQQLQSEVEIYRIRLPGPLKVGEGKPENQNHAIIFTRGDAVQTIDMNQDNYFEEALKMRNLLEELYNVEDLKVSLLSVTVVAYVYNNVVNLCSLALEEGISGDFPIRLAVYVCPYLVKLTLTIYSVASVSTIF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	209797	216254	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006075 (1->3)-beta-D-glucan biosynthetic process

cellular_component

GO:0000148 1,3-beta-D-glucan synthase complex

GO:0016020 membrane

molecular_function
GO:0003843 1,3-beta-D-glucan synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004140.1	PF14288.1	FKS1_dom1	160	273	1.00E-38
Glyur000056s00004140.1	PF02364.10	Glucan_synthase	876	1196	1.30E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.582
SRR1783600	control	9.802
SRR1783602	moderate drought stress	11.107
SRR1811619	moderate drought stress	11.047

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.598
DRR006520	Root Summer glycyrrhizin high producing strain	5.621
DRR006521	Root Winter glycyrrhizin high producing strain	3.704
DRR006522	Root Winter glycyrrhizin high producing strain	3.624
DRR006523	Root Summer glycyrrhizin low producing strain	7.270
DRR006524	Root Summer glycyrrhizin low producing strain	7.164
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.989
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.794
SRR2868004	Drought Stress (root)	16.202
SRR2967015	Control (root)	16.065

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.929
SRR9715740	Leaf	4.295
SRR9715741	Leaf	5.667
SRR9715739	Root	5.391
SRR9715742	Root	18.884
SRR9715743	Root	16.865

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.218
SRR8749028	MeJA induced 9h	5.411
SRR8749029	MeJA induced 9h	2.538
SRR8749030	Uninduced	3.420
SRR8749031	Uninduced	2.888
SRR8749032	Uninduced	3.154

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.947
SRR8400027	Control - Root	17.891