Gene detail

Gene detail information of Glyur000056s00004129

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27450.1	8.00E-61	Aluminium induced protein with YGL and LRDR motifs
NR	XP_003545925.1	4.47E-166	PREDICTED: stem-specific protein TSJT1-like [Glycine max]
COG	YP_006405292.1	4.00E-07	asparagine synthase [Sulfurospirillum barnesii SES-3]
Swissprot	tr\|P24805\|TSJT1_TOBAC	4.00E-64	Stem-specific protein TSJT1
trEMBL	tr\|I1MEH7\|I1MEH7_SOYBN	2.00E-166	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G07930.1}

Sequence

Transcript Sequence

>Glyur000056s00004129.1
GCTTGGTTACGTACAATTACACGTATCAGCCTGACATCTGAAACCATCCTANGATGCTGCCACGTCCTCTATTTGTCCATTTATAAGCCTCTGATTCCAAAACTGAGCAAGTGATACTAATAATTAAGAAGTTCTATGAAAACAAACATTGAGCAGAGGAGAGCACAATTAAGAACCATTTGATTACTAAACTAATAACCGAGCAAAAAATGTTGGCAGTGTTTGCAAAAGCAATTGGAAAACCACCTGAGGAGCTGAGGCTTCCGGCAATTTCGTCCGATAATTCAAAGACCCCAGAAGAAATTGTAAACAAGTTTCAATCTTTGTGGCCAGATTCTGCAGTTTACAACCTCCCACATGGGAATTTCATGGCTTTGTCCCATCAAGACGAAAATCCAACACACCCCAGGTCAATTGTTGTTTTGGACGATATCTTCTGCATTTTTGTGGGGACTCTTGNAAACGTTGCTGACCTTAGACATCATTATGGCCTTCCGAGACAAGTAACAGAAGCTATGGTTGTGGTTGAAGCCTATAAGACCTTGAGAGATCGAGCCCCCTACCCACCTGACCAAGTTGTTAAGCATCTTGATGGAAAATTCGCATTCATCATCTTTGATGCCAGGACAAACACTCTTTTTATAGCCAGGGATCGTGAAGGAAGTGTGGAATTCCTATGGGGAATGGCAAGAGACGGGTCCTTAGTATGCTCTGACGACCCTAAAATCATTAGAGAGGGCTGTGGAAAAGCATGTGCACCTTTTCCTCAAGGGTGCATTTTCATCAATGGGAGTGGGTTGACAAGCTTTGATCATCCCCTGCACAAGGTTCGAGCCGTTGCGCATGAAGACGACAGTGGAAACATCTTGAGTGTATATTTTCAGGTGGATTTGTACACAAAGATTCCCAGCATTCCCCGCACTGGAAGTGCAGATAATTGGGCAGATGCTGCTGTGGCCAAGGGAGAGTAAATGTTTGATATAAATTATGATCAACTTCAAATATTCTGGGGATTGTGCTTGTGCATTCATGTGTAAGTAATGAAGGGGAGAAAAATATGCTACCTTTAATGTTAAAAATGAACTCTTTTTTTCCCTTTTCCATAAATCCGAGTCTGAAGTTGTTTCTCAAGAAACAACAAGAAACCTGGCAGTGTATAATTAACATCACAAAATAGTTGTTGTGTGTATTATTTAGCAATTATAATTGGGTAATATGTATTAACTTACATGCTGTTGGAACATGTGGTTAAATCCACANAAATGTTTCTGCAGCCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	161587	163907	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004129.1	PF12481.3	DUF3700	2	226	4.00E-87

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.100
SRR1783600	control	25.046
SRR1783602	moderate drought stress	17.467
SRR1811619	moderate drought stress	17.497

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.990
DRR006520	Root Summer glycyrrhizin high producing strain	33.491
DRR006521	Root Winter glycyrrhizin high producing strain	95.146
DRR006522	Root Winter glycyrrhizin high producing strain	92.666
DRR006523	Root Summer glycyrrhizin low producing strain	54.346
DRR006524	Root Summer glycyrrhizin low producing strain	54.611
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.356
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.326

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.315
SRR2868004	Drought Stress (root)	6.399
SRR2967015	Control (root)	9.548

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.762
SRR9715740	Leaf	2.069
SRR9715741	Leaf	3.610
SRR9715739	Root	7.817
SRR9715742	Root	11.165
SRR9715743	Root	10.030

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.308
SRR8749028	MeJA induced 9h	239.824
SRR8749029	MeJA induced 9h	113.736
SRR8749030	Uninduced	105.779
SRR8749031	Uninduced	164.332
SRR8749032	Uninduced	120.148

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.690
SRR8400027	Control - Root	23.745