Gene detail information of Glyur000056s00004118.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G48560.10chlorsulfuron/imidazolinone resistant 1
NRXP_004485753.10PREDICTED: acetolactate synthase 1, chloroplastic-like [Cicer arietinum]
COGYP_003370314.10acetolactate synthase large subunit [Pirellula staleyi DSM 6068]
Swissprottr|P27818|ILVB1_BRANA0Acetolactate synthase 1, chloroplastic (Precursor)
trEMBLtr|D2DJQ3|D2DJQ3_SOYBN0Acetolactate synthase {ECO:0000256|RuleBase:RU003591} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00056119922121877-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K01652E2.2.1.6L, ilvB, ilvG, ilvIEC:2.2.1.62-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Butanoate metabolismmap00650
C5-Branched dibasic acid metabolismmap00660
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770


Gene Ontology

biological_process

GO:0009082  branched-chain amino acid biosynthetic process


molecular_function

GO:0000287  magnesium ion binding

GO:0003824  catalytic activity

GO:0003984  acetolactate synthase activity

GO:0030976  thiamine pyrophosphate binding

GO:0050660  flavin adenine dinucleotide binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000056s00004118.1PF02776.13TPP_enzyme_N792438.20E-53
Glyur000056s00004118.1PF00205.17TPP_enzyme_M2704012.80E-38
Glyur000056s00004118.1PF02775.16TPP_enzyme_C4656208.10E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control62.867
SRR1783600control63.475
SRR1783602moderate drought stress55.521
SRR1811619moderate drought stress54.398

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.326
DRR006520Root Summer glycyrrhizin high producing strain51.771
DRR006521Root Winter glycyrrhizin high producing strain53.440
DRR006522Root Winter glycyrrhizin high producing strain51.650
DRR006523Root Summer glycyrrhizin low producing strain48.153
DRR006524Root Summer glycyrrhizin low producing strain47.233
DRR006525Leaf Summer glycyrrhizin high producing strain30.826
DRR006526Leaf Summer glycyrrhizin high producing strain30.716

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)56.468
SRR2868004Drought Stress (root)50.511
SRR2967015Control (root)46.020

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf25.767
SRR9715740Leaf24.858
SRR9715741Leaf37.128
SRR9715739Root103.195
SRR9715742Root87.545
SRR9715743Root99.043

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h37.860
SRR8749028MeJA induced 9h40.708
SRR8749029MeJA induced 9h23.894
SRR8749030Uninduced29.876
SRR8749031Uninduced33.146
SRR8749032Uninduced26.233

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root54.404
SRR8400027Control - Root49.931

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved