Gene detail

Gene detail information of Glyur000056s00004115

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27450.1	1.00E-93	Aluminium induced protein with YGL and LRDR motifs
NR	XP_004485756.1	2.73E-169	PREDICTED: stem-specific protein TSJT1-like [Cicer arietinum]
Swissprot	tr\|P24805\|TSJT1_TOBAC	8.00E-33	Stem-specific protein TSJT1
trEMBL	tr\|G7IP18\|G7IP18_MEDTR	2.00E-168	Stem-specific TSJT1-like protein {ECO:0000313\|EMBL:AES63780.1}

Sequence

Transcript Sequence

>Glyur000056s00004115.1
AGAATGATTCATTCCTCCCATCATTTTCATCACTACCATTTTTCATAGGCGCTCNCTAATTCTCATTCTCGATCTGCAAGCTATTTGGATTGCTGATTTTTGCTAATTGCTATTTACACTTAGAGGTAAAGATGTTGGCTATTTTCAAGGAGAAGTTGGTGAATGCTCCCAAGGAGCTGAACAGTCCAGCTTCTTTGAACTCACACACTAAGCCTAAGCCAGCTCATGAGATCCTTAGAGATTTCATGTCCTGCAATTCCTCCAATGCATTCTTCATGGACTTTGGAAATGATGCTTTGCTGGCATATTCCCCTTCAAAGAAGCCCTCCATTCATCAGAGGTTGTTTAGTGGTTTGGACAACATGTACTGTGTATTCATGGGAAGCCTGCACAACCTGAGTCAGCTGAACAAGCAGTATGGGCTATCAAAGGGAACCAATGAGGCAATGTTCATCATTGAAGCCTATAGGACACTTCGTGATAGGGGTCCATACCCAGCTGATCAGGTCCTCAAAGAACTTGAGGGCAGTTTTGGATTTGTGATCTATGACCACAAGGATGGAACAGTTTTTGTTGCATCTGGTTCTAGTGGCCAGATTGGGCTATTCTGGGGTATTGCAGCTGATGGTTCAGTTGTTGTTTCTGAAAACCTGGATCTCATAAAAGCAAGCTGTGCTAAATCATTTGCACCATTCCCAACTGGTTGCATGTTTCATAGTGAGCATGGTCTGAGGAGCTTTGAGCATCCAACCAAGAATATGAAAGCAATGCCTCGGATTGACAGCGAGGGGGTTATGTGTGGTGCCAACTTCAATGTGGATTCTCAGTCAAGGAACGTCCAAATGATGCCACGTGTTGGAAGTGAAGCTAATTGGGCTACATGGGGCTAGGCTAGGCTAATTTTTTAATCATAATAATCTAAGGTTTTTTTCTTCTTTTTATTTGGGGGTTTGATTGCCAAGAGCAACTTAATATTGGGGGGGGGGGGGGGGGGTGACTGTATCTTGTTTTTCTCGTTTGGTTCCACTGTTGTGTACATATTTATGCTTTAATGTTGGACACGACCGGTAATTTCCAATATGAATAACAGTTAAGTTTTACATTTGACTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	103066	104906	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004115.1	PF12481.3	DUF3700	2	229	7.40E-106
Glyur000056s00004115.2	PF12481.3	DUF3700	20	247	9.50E-106

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.819
SRR1783600	control	3.853
SRR1783602	moderate drought stress	15.481
SRR1811619	moderate drought stress	15.429

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.001
DRR006520	Root Summer glycyrrhizin high producing strain	20.944
DRR006521	Root Winter glycyrrhizin high producing strain	26.363
DRR006522	Root Winter glycyrrhizin high producing strain	26.025
DRR006523	Root Summer glycyrrhizin low producing strain	9.721
DRR006524	Root Summer glycyrrhizin low producing strain	9.807
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.299
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.167

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	115.312
SRR2868004	Drought Stress (root)	337.829
SRR2967015	Control (root)	523.287

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	229.294
SRR9715740	Leaf	43.377
SRR9715741	Leaf	259.088
SRR9715739	Root	4.232
SRR9715742	Root	15.977
SRR9715743	Root	11.924

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	353.319
SRR8749028	MeJA induced 9h	839.827
SRR8749029	MeJA induced 9h	851.413
SRR8749030	Uninduced	404.412
SRR8749031	Uninduced	3013.442
SRR8749032	Uninduced	2739.990

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.496
SRR8400027	Control - Root	41.988