Gene detail information of Glyur000056s00004114 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G04920.2 | 0 | sensitive to freezing 6 |
| NR | XP_003543060.2 | 0 | PREDICTED: mediator of RNA polymerase II transcription subunit 16-like isoform X1 [Glycine max] |
| Swissprot | tr|F4JGZ1|MED16_ARATH | 0 | Mediator of RNA polymerase II transcription subunit 16 |
| trEMBL | tr|I1M273|I1M273_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G31480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 88094 | 102099 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.215 |
| SRR1783600 | control | 11.212 |
| SRR1783602 | moderate drought stress | 12.511 |
| SRR1811619 | moderate drought stress | 12.373 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.754 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.662 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.520 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.314 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.409 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.503 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.944 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.481 |
| SRR2868004 | Drought Stress (root) | 38.234 |
| SRR2967015 | Control (root) | 39.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.612 |
| SRR9715740 | Leaf | 12.240 |
| SRR9715741 | Leaf | 15.234 |
| SRR9715739 | Root | 8.586 |
| SRR9715742 | Root | 23.492 |
| SRR9715743 | Root | 19.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.127 |
| SRR8749028 | MeJA induced 9h | 11.983 |
| SRR8749029 | MeJA induced 9h | 5.508 |
| SRR8749030 | Uninduced | 6.308 |
| SRR8749031 | Uninduced | 3.571 |
| SRR8749032 | Uninduced | 4.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.935 |
| SRR8400027 | Control - Root | 33.114 |