Gene detail information of Glyur000056s00004107 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27250.1 | 4.00E-09 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | AFK44507.1 | 6.93E-46 | unknown [Lotus japonicus] |
| COG | YP_004446879.1 | 3.00E-19 | NAD-dependent epimerase/dehydratase [Haliscomenobacter hydrossis DSM 1100] |
| Swissprot | tr|P14720|DFRA_PETHY | 6.00E-21 | Dihydroflavonol-4-reductase |
| trEMBL | tr|I3SW65|I3SW65_LOTJA | 3.00E-46 | Uncharacterized protein {ECO:0000313|EMBL:AFK44507.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00056 | 49271 | 53200 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000056s00004107.2 | PF01370.16 | Epimerase | 9 | 89 | 1.80E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.035 |
| SRR1811619 | moderate drought stress | 0.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.100 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.201 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.628 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.048 |
| SRR2868004 | Drought Stress (root) | 2.614 |
| SRR2967015 | Control (root) | 2.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.598 |
| SRR9715740 | Leaf | 8.998 |
| SRR9715741 | Leaf | 6.530 |
| SRR9715739 | Root | 0.045 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.034 |
| SRR8749031 | Uninduced | 0.196 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.231 |
| SRR8400027 | Control - Root | 0.139 |