Gene detail

Gene detail information of Glyur000056s00004105

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20780.1	1.00E-174	Major facilitator superfamily protein
NR	XP_003593550.1	0	hypothetical protein MTR_2g013310 [Medicago truncatula]
COG	YP_134468.1	3.00E-93	metabolite transport protein [Haloarcula marismortui ATCC 43049]
Swissprot	tr\|Q0WUU6\|PLT4_ARATH	0	Probable polyol transporter 4
trEMBL	tr\|G7IPQ6\|G7IPQ6_MEDTR	0	Polyol/monosaccharide transporter 1 {ECO:0000313\|EMBL:AES63801.1}

Sequence

Transcript Sequence

>Glyur000056s00004105.1
GTTGTTGGGGGTGAGAGAAGGAGAACAATGGGGTTGGTTGGTGTCCAAGAAAATGGGAATGGGAATGGTGGTTTGATATCTGAGATTCCATTGGGGGCTAAAACTAAGTACATCAGGATGACCTCTGATCCCAACGAGGCTGAAGAAGAAGGCTTGTCAACCAAAGTGCACGATACAAAGAAATATATCTTTGCATGTGCCATCTTTGCCTCTCTCAATTCCGTGCTTCTCGGCTATGATGTGGGTGTTATGAGTGGAGCAATTATATTCATTCAGGAGGATTTGAAGATAACAGAGGTTCAGCAAGAAGTACTTGTTGGAATTTTGAGCATAATATCCCTGTTGGGTAGTTTAGCAGGTGGGAAAACATCTGATGCGATTGGCAGAAAGTGGACAATTGGTTTGGCAGCACTCATCTTCCAAACAGGTGGAGCTATCATGGCTCTTGCCCCATCCTTTAAAGTATTGATGATAGGAAGACTCTTAGCCGGGGTGGGTATAGGTTTCGGTGTCATGATTGCGCCTGTATATATTGCTGAAATATCCCCCGCCATTGCCAGGGGATCTCTTACCTCTTTCCCTGAGATCTTCATAAATTTTGGAATCCTCCTTGGCTACATATCNAACTATGCGTTTTCTAGGCTTCCGGCGCACATAAATTGGAGGATAATGCTTGGCGTGGGACTTATTCCTTCGGTTGTTATTGCTATCGCGCTGTTTATCATACCCGAATCCCCAAGATGGCTTGTGGTGCAGAATAGGATTGATGAAGCTAGACTGGTGCTGTCAAAGATAAGTGAAAGTGAGAAGGAGGCTGAAGAAAAGTTGCAAGAAATTCAGGCAGCTGCCGGGCCAGCAAATGCGGAGAAGTACGAATCAANAGCAGTGTGGAAAGAAATATTGCGTCCTTCTCCTCCGATTCGGAGAATGCTTATAACTGGTTGTGGAATCCAATGTTTCCAACAGATCACAGGGATAGATACAACTGTGTATTATAGCCCCACAATTTTCAAAAATGCCGGTATCACTGGCAACTCTGAGCTTCTTGCAGCAACTGTTGCCGTTGGGTTCACCAAGACTGTGTTCATCTTGATAGCTATATTTCTTATCGACAAATTGGGGAGGAGGCCTTTGCTTTACGCGAGCACGATTGGGATGACGGTGTGCTTATTTAGCCTGAGCTTCTCCCTGGCATTTCTGAGCCATGCAAAAGTCGGGATNGTATTGGCAATTCTTGCTGTTTGTGGAAATGTAGCTTCCTTCTCAGTAGGACTTGGCCCCATATGCTGGGTCCTGTCATCTGAGATATTCCCTTTGAGACTTAGAGCTCAGGCATCAGCTCTTGGAGCAGTGGGAAGTAGGGTCAGCAGCGGCGTTATCTCCATGTCATTCCTCTCGGTCACGCGAGCAATCACAGTAGCAGGAACCTTCTTTGTTTTCGGTGTTATTTCGTGTAGCGCTGTTGCCTTTGTTCATTACTGTGTTCCAGAGACAAGAGGAAAAACTTTAGAGGAAATTGAAGTACTCTTCCAAAACCCAGATGAATTGCAGGGAAGAGAGGTAGAAATGGGAGATGGGGAGCGTCTGATGCAGAAATCATGAGTTGCTGGCATGCCAAATTGCCAATTCATCATACTAAGTTCCAAGATGTTTCAAATCTTCGTTTGGTGACAGGAATATCAATTTTCTTTTGTAATAGCGGGCATTTCTGCTTTTACAACATATAGATTTATTCTNCCTGCAGAAGGACACCATTTATATTTTATATATACTAACAAAACAGGAGAGTGTTGTCCTTCAAGCCACCAGCACCACTATTATAATTCATTTGTATCGTGATTTTTTTTTTACAGTATGTTGAAAATGAGTTCATGTAGCGTCGTTTCNTCGAGCCATAATCAGAATTCTGTTGTCTCTTTTCTCTTCCTCATCATGTGTCTCTCTGTTTTCCGTCTATATATTCATTGTAGGAATAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00056	41941	44543	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000056s00004105.1	PF00083.19	Sugar_tr	66	510	1.20E-110

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.445
SRR1783600	control	9.505
SRR1783602	moderate drought stress	6.536
SRR1811619	moderate drought stress	6.482

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.671
DRR006520	Root Summer glycyrrhizin high producing strain	8.385
DRR006521	Root Winter glycyrrhizin high producing strain	1.126
DRR006522	Root Winter glycyrrhizin high producing strain	1.043
DRR006523	Root Summer glycyrrhizin low producing strain	5.291
DRR006524	Root Summer glycyrrhizin low producing strain	5.215
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.806
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.577

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.894
SRR2868004	Drought Stress (root)	8.516
SRR2967015	Control (root)	8.514

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.284
SRR9715740	Leaf	11.142
SRR9715741	Leaf	14.223
SRR9715739	Root	19.336
SRR9715742	Root	24.784
SRR9715743	Root	27.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.289
SRR8749028	MeJA induced 9h	3.175
SRR8749029	MeJA induced 9h	2.602
SRR8749030	Uninduced	3.280
SRR8749031	Uninduced	1.262
SRR8749032	Uninduced	1.507

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.719
SRR8400027	Control - Root	14.989