Gene detail information of Glyur000055s00004596


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15520.17.00E-95tRNA/rRNA methyltransferase (SpoU) family protein
NRKHN03411.11.82E-137tRNA (guanosine(18)-2'-O)-methyltransferase [Glycine soja]
COGYP_528936.16.00E-27tRNA/rRNA methyltransferase (SpoU) [Saccharophagus degradans 2-40]
trEMBLtr|K7MJI7|K7MJI7_SOYBN7.00E-138Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G02381.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold00055451434453303-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0006396  RNA processing


molecular_function

GO:0003723  RNA binding

GO:0008173  RNA methyltransferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000055s00004596.1PF00588.14SpoU_methylase61433.00E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.744
SRR1783600control30.710
SRR1783602moderate drought stress49.708
SRR1811619moderate drought stress47.563

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain46.285
DRR006520Root Summer glycyrrhizin high producing strain44.016
DRR006521Root Winter glycyrrhizin high producing strain42.537
DRR006522Root Winter glycyrrhizin high producing strain43.950
DRR006523Root Summer glycyrrhizin low producing strain31.284
DRR006524Root Summer glycyrrhizin low producing strain32.179
DRR006525Leaf Summer glycyrrhizin high producing strain10.328
DRR006526Leaf Summer glycyrrhizin high producing strain10.190

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)23.141
SRR2868004Drought Stress (root)17.756
SRR2967015Control (root)24.686

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf10.349
SRR9715740Leaf11.509
SRR9715741Leaf11.466
SRR9715739Root44.088
SRR9715742Root31.101
SRR9715743Root32.319

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.818
SRR8749028MeJA induced 9h20.632
SRR8749029MeJA induced 9h22.041
SRR8749030Uninduced10.215
SRR8749031Uninduced4.454
SRR8749032Uninduced11.069

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root41.906
SRR8400027Control - Root40.143

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved