Gene detail information of Glyur000055s00004595 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21550.1 | 4.00E-43 | DUF679 domain membrane protein 2 |
| NR | XP_003609548.1 | 2.71E-88 | hypothetical protein MTR_4g118470 [Medicago truncatula] |
| trEMBL | tr|G7JHW6|G7JHW6_MEDTR | 1.00E-88 | Transmembrane protein, putative {ECO:0000313|EMBL:AES91745.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 445729 | 446379 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004595.1 | PF05078.7 | DUF679 | 27 | 189 | 3.40E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.166 |
| SRR1783600 | control | 0.169 |
| SRR1783602 | moderate drought stress | 0.058 |
| SRR1811619 | moderate drought stress | 0.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.087 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.057 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.479 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.510 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.023 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.226 |
| SRR2868004 | Drought Stress (root) | 0.604 |
| SRR2967015 | Control (root) | 0.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.746 |
| SRR9715740 | Leaf | 2.070 |
| SRR9715741 | Leaf | 1.719 |
| SRR9715739 | Root | 3.674 |
| SRR9715742 | Root | 6.149 |
| SRR9715743 | Root | 6.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.998 |
| SRR8749031 | Uninduced | 0.118 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.298 |
| SRR8400027 | Control - Root | 0.807 |