Gene detail

Gene detail information of Glyur000055s00004587

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18900.1	4.00E-122	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004508327.1	0	PREDICTED: prolyl 4-hydroxylase subunit alpha-1-like [Cicer arietinum]
COG	YP_004753320.1	1.00E-44	peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331]
Swissprot	tr\|Q8LAN3\|P4H4_ARATH	5.00E-155	Probable prolyl 4-hydroxylase 4 (Precursor)
trEMBL	tr\|I1KN53\|I1KN53_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G38330.1}

Sequence

Transcript Sequence

>Glyur000055s00004587.1
TCCCGCTCGGTGACTCTGATTTAGAACGAAAGAAGAAACGGAGAGAGGAAAGGGAAAGAAACAAACACTTATCCGGGAAAATTAAAGTGATCGGAAATGAGTAGGGTTTGGTTTTTGCTATTCCTGCTGCTTCTGATCTCCCAGTTGAATGAAGCGTGGAGCTCCTACGCGGGTTCCGCTAGCTCCATCATCAATCCTTCTAAGGTCAAACAGATTTCGTGGAAGCCAAGAGCTTTCGTTTACGAAGGTTTCCTCACCGACTTGGAGTGCGACCACTTGATCTCCCTAGCGAAATCGGAGCTGAAGAGATCTGCCGTAGCGGATAATCTCTCCGGAGAGAGCCAGTTGAGTGAGGTTCGAACCAGCTCTGGTGCGTTCATTGCCAAAAACAAGGATCCTATTGTTGCTGGTATTGAGGACAAGATTTCGTCCTGGTCCTTTCTTCCTAAAGAAAATGGGGAAGACATACAAGTATTGAGATACGAGCATGGGCAGAAATATGACCCACATTATGATTACTTTACTGATAAAGTTAATATAGCTCGGGGTGGACACCGCATGGCGACTGTTCTCATGTATCTCACTAATGTGACCAAAGGCGGTGAAACAGTGTTCCCAGTTGCACAGGAACCTCCACGTCGCAGTCGCAGAGGTTCTGAAACTAATAGTGAGCTCTCTGAGTGTGCCAAAAAAGGAATAGCAGTGAAACCACGTAGAGGGGATGCACTTCTTTTCTTCAGTCTTTACGCAAATGCTACCCCAGACACTAGCAGTCTCCATGCAGGGTGCCCAGTAANCGAAGGTGAGAAATGGTCAGCAACAAAGTGGGTTCATGTAGACTCATTTGATAAGAATGTAGGAGGAGGTGGAGGTGGATCATCAGGGGGCTGCTCTGACCAGCATGAAAGCTGTGAGAGATGGGCTTCCCTTGGAGAATGCACTAACAATCCTGAGTATATGGTTGGATCTTCAGATCTTCCTGGATCCTGCAGGAAGAGTTGTAAGGCATGTTTGTAAGGCATGTTAGAATTTTTATCGAATGCTTTTCGGATTCTAGCTACTTGGTATTTTCTGCCACTATTTTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	409365	412044	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004587.1	PF03171.15	2OG-FeII_Oxy	121	246	2.00E-13
Glyur000055s00004587.1	PF01549.19	ShK	264	305	0.00074

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.965
SRR1783600	control	34.102
SRR1783602	moderate drought stress	17.905
SRR1811619	moderate drought stress	18.204

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.080
DRR006520	Root Summer glycyrrhizin high producing strain	46.788
DRR006521	Root Winter glycyrrhizin high producing strain	49.719
DRR006522	Root Winter glycyrrhizin high producing strain	48.749
DRR006523	Root Summer glycyrrhizin low producing strain	31.334
DRR006524	Root Summer glycyrrhizin low producing strain	31.160
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.534
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.962

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	84.069
SRR2868004	Drought Stress (root)	69.219
SRR2967015	Control (root)	68.626

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.723
SRR9715740	Leaf	18.547
SRR9715741	Leaf	16.043
SRR9715739	Root	64.403
SRR9715742	Root	37.360
SRR9715743	Root	43.217

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.749
SRR8749028	MeJA induced 9h	25.567
SRR8749029	MeJA induced 9h	19.882
SRR8749030	Uninduced	15.904
SRR8749031	Uninduced	7.542
SRR8749032	Uninduced	8.338

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.443
SRR8400027	Control - Root	63.238