Gene detail

Gene detail information of Glyur000055s00004581.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G15560.1	Deoxyxylulose-5-phosphate synthase
NR	AAQ84169.1	1-deoxy-D-xylulose 5-phosphate synthase [Pueraria montana var. lobata]
COG	YP_002289642.1	1-deoxy-D-xylulose-5-phosphate synthase [Oligotropha carboxidovorans OM5]
Swissprot	tr\|O78328\|DXS_CAPAN	Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic (Precursor)
trEMBL	tr\|Q6EJC9\|Q6EJC9_PUEML	1-deoxy-D-xylulose 5-phosphate synthase {ECO:0000313\|EMBL:AAQ84169.1}

Sequence

Transcript Sequence

>Glyur000055s00004581.1
ATGGATCTCTACGCATTCTCATGTCCTACCTTTGTGAACAGTGTCACAGCTTCAGATCCTCGAAGATCAGTTCCTCTGGGTTCTCACTCTCAATGGGGTGCGGATTTGCTCCACCACTCCCAACACAGGCTCAACCAGGTGAAAAAAAAGTGTGGTGGGGTTTATGCATCACTATCAGAGAGGGGGGAGTACTATTCCCAGAGACCTCCAACTCCGCTGCTGGACACCATAAACTATCCAATTCATATGAAAAATCTCTCTACCAAGGAGCTGAAACAACTGGCGGATGAACTGCGTTCTGATGTTATTTTCAGTGTTTCCAGAACTGGGGGTCATTTGGGCTCAAGCCTAGGTGTTGTGGAACTCACTGTTGCTCTTCACTATGTCTTCAATACCCCTCAGGACAAGATATTGTGGGATGTTGGTCACCAGTCTTACCCNCATAAAATACTCACTGGTAGAAGGGATAAGATGCATACCATGAGGCAGACAAATGGGTTATCTGGGTTTACAAAACGCTCTGAGAGTGAATATGATTGTTTTGGCACTGGTCACAGCTCAACAACTATTTCAGCTGGACTTGGTAATTCTTCTGTTCTGTCTGCTATCCGGCGATGCGATTTTTGTGATTTGGCTTTTAACTTTGACAATTCTGTTGAACCAACAGGAATGGCTGTTGGGAGAGATCTGAAAGGAAGGAAGAACAATGTAGTTGCTGTTATAGGTGATGGTGCCATGACAGCAGGGCAAGCTTATGAAGCCATGAACAATGCTGGATATCTTGATTCTGACATGATTGTTATTCTGAATGACAACAAACAGGTCTCTCTACCAACTGCTACACTTGATGGACCCATACCACCTGTAGGAGCTTTGAGTAGTGCACTCAGTAGAATACAATCAAACAGACCTCTTAGAGAATTGAGAGAGGTTGCCAAGGGAGTAACAAAACGAATTGGAGGCCCCATGCATGAATTGGCCGCGAAAGTTGACGAGTATGCTCGTGGTATGATCAGTGGTTCTGGATCAACACTTTTCGAAGAGCTTGGACTCTACTATATTGGTCCTGTTGATGGTCATAGCATAGATGACCTTGTTTCCATTCTCAAAGAAGTCAAAAGTACTAAAACTACTGGGCCTGTATTGATCCATGTTATCACCGAAAAAGGCCGTGGATACCCATACGCAGAGAAAGCAGCTGACAAGTACCATGGAGTTACCAAGTTTGACCCACCAACTGGAAAGCAATTCAAAGCCAAGGCAACCACCCAGTCTTACACAACATACTTTGCAGAGGCTTTGATTGCAGAAGCCATGGCTGACCAAAACATTGTCGCAATCCATGCCGCAATGGGAGGTGGAACTGGCATGAATATCTTCCATCGCCGTTTTCCGACAAGATGCTTTGATGTGGGGATAGCAGAACAGCATGCTGTTACATTTGCTGCAGGTCTAGCCTGTGAAGGTCTTAAGCCTTTCTGTGCAATTTACTCATCATTCTTGCAGAGGGCCTATGACCAGGTGGTACATGATGTGGATTTGCAGAAGCTGCCTGTAAGATTTGCAATGGACAGAGCTGGATTAGTTGGAGCAGATGGTCCTACGCATTGCGGTTCTTTTGACGTCACTTTTATGGCATGCCTCCCTAACATGGTGGTGATGGCTCCTTCTGATGAAGCAGAGCTTTTCCACATGGTTGCCACTGCAGCAGCCATTAACGATCGACCAAGTTGTTTCCGGTATCCAAGGGGAAATGGCATTGGTGTTGAACTGCCACCTGGGAATAAAGGCATTCCTCTTGAGATTGGGAAAGGTAGGATACTGATTGAAGGGGAAAGAGTGGCCCTCTTGGGCTATGGAACAGCCGTTCAGAGCTGTTTAACTGCGGCTTCNTTAGTGGAACGTCATGGCTTGCGCTTAACTGTTGCCGATGCCCGTTTCTGCAAGCCATTGGATCGTTCCATGATTCGCAGCCTGGCAAAATCACACGAGGTTCTGATCACCGTAGAAGAAGGATCAATAGGAGGATTTGGTTCTCATGTTGCTCAGTTCATGGCCCTTGATGGCCTTCTAGATGGAAAATTGAAGTGGAGGCCAATGGTTCTTCCTGACCGCTATATCGACCATGGATCGCCNGCTGACCAATTGTCTCTAGCTGGTCTCACACCATCTCACATAGCAGCAACAGTGTTCAACATACTTGGGCAGACAAGAGAGGCACTAGAGGTCATGTCATGAGAAAAAGTACAAAGGGGTTCAATTTTTCACTCCCCACAATATAACATTATATGATGATTCACCTTGTGTAATGTAAATATGTAATGTGATAATGTATATTATTTAAGTGAAAAATGCAGGTTGTCAAATAGTAATACCAACTAGTTATAGAGGAAAAAAAGATCTCAACTTTTNCTGTGGGTGCAAAAGAGAAAAGCCTCTGTTATCGATAGACTGGATCGCTTAAACAAAACATTGCTAATTTGCCGAGGAAGTTAGTTCATGACAGAGCCAACGGTCGAACTAATTAATATCTGCATTGCTCTGAGCCTAACAAAATCTCTAATTATTTGACTTTGACGGTAGAAATGTTACTACCAGAGGCAAGCTAGGCCTAAACATGCACGTNGAAATATGGTGGAAAAACTGCAAAATCTCTAATTATTGTCATTGTCTAAGTTTCACATTTATTCACCTACGATCTTTAAATTGAAACTCTTTATCCGAAAACAAGGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	370661	374634	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01662	dxs	EC:2.2.1.7	Thiamine metabolism	map00730
			Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0016114 terpenoid biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004581.1	PF13292.1	DXP_synthase_N	74	196	1.50E-60
Glyur000055s00004581.1	PF13292.1	DXP_synthase_N	222	387	4.40E-42
Glyur000055s00004581.1	PF02779.19	Transket_pyr	424	585	1.20E-43
Glyur000055s00004581.1	PF02780.15	Transketolase_C	603	726	6.50E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.743
SRR1783600	control	10.717
SRR1783602	moderate drought stress	13.070
SRR1811619	moderate drought stress	12.918

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.548
DRR006520	Root Summer glycyrrhizin high producing strain	12.292
DRR006521	Root Winter glycyrrhizin high producing strain	3.666
DRR006522	Root Winter glycyrrhizin high producing strain	3.329
DRR006523	Root Summer glycyrrhizin low producing strain	11.719
DRR006524	Root Summer glycyrrhizin low producing strain	11.669
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.081
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.851

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.009
SRR2868004	Drought Stress (root)	54.775
SRR2967015	Control (root)	34.604

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.327
SRR9715740	Leaf	15.543
SRR9715741	Leaf	16.569
SRR9715739	Root	11.915
SRR9715742	Root	18.643
SRR9715743	Root	16.562

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.900
SRR8749028	MeJA induced 9h	55.581
SRR8749029	MeJA induced 9h	21.901
SRR8749030	Uninduced	4.171
SRR8749031	Uninduced	1.077
SRR8749032	Uninduced	1.601

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.118
SRR8400027	Control - Root	24.273