Gene detail information of Glyur000055s00004574 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25050.1 | 1.00E-25 | acyl carrier protein 4 |
| NR | ACJ07133.1 | 7.67E-69 | acyl carrier protein 1 [Arachis hypogaea] |
| COG | NP_487382.1 | 2.00E-14 | acyl carrier protein [Nostoc sp. PCC 7120] |
| Swissprot | tr|P93092|ACP1_CASGL | 1.00E-59 | Acyl carrier protein 1, chloroplastic (Precursor) |
| trEMBL | tr|D8KXY1|D8KXY1_ARAHY | 3.00E-69 | Acyl carrier protein {ECO:0000256|RuleBase:RU000722} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 325601 | 328002 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004574.1 | PF00550.20 | PP-binding | 64 | 130 | 9.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 226.384 |
| SRR1783600 | control | 227.010 |
| SRR1783602 | moderate drought stress | 111.045 |
| SRR1811619 | moderate drought stress | 111.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 141.629 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 140.362 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 76.366 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 75.361 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 125.257 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 125.733 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 228.625 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 225.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 460.444 |
| SRR2868004 | Drought Stress (root) | 261.428 |
| SRR2967015 | Control (root) | 234.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 267.373 |
| SRR9715740 | Leaf | 191.452 |
| SRR9715741 | Leaf | 203.572 |
| SRR9715739 | Root | 187.841 |
| SRR9715742 | Root | 109.710 |
| SRR9715743 | Root | 121.293 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 79.426 |
| SRR8749028 | MeJA induced 9h | 19.219 |
| SRR8749029 | MeJA induced 9h | 35.206 |
| SRR8749030 | Uninduced | 15.700 |
| SRR8749031 | Uninduced | 1.971 |
| SRR8749032 | Uninduced | 9.468 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 608.334 |
| SRR8400027 | Control - Root | 628.090 |