Gene detail

Gene detail information of Glyur000055s00004573

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08820.2	5.00E-32	vamp/synaptobrevin-associated protein 27-2
NR	NP_001239873.1	1.54E-160	uncharacterized protein LOC100794670 [Glycine max]
Swissprot	tr\|B9DHD7\|VAP22_ARATH	7.00E-45	Vesicle-associated protein 2-2, N-terminally processed
trEMBL	tr\|C6T767\|C6T767_SOYBN	6.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G38170.3}

Sequence

Transcript Sequence

>Glyur000055s00004573.1
GTGAGCCCCACTCACGTAACCGACCCCAACCAATACCATCCCATCCCTCAATGTAACAACTCATCATCCATCCACCTTCGTTTTTCTTTTCTTTTCTTTTCTTTTCTTTGTTACAACTCATTTTCTTTCCTTTCATTTCCCACCCTTTTCTTCACTCTCGCTTCTCTTCGCTTCATTCTTACTCTGCACAAACACACACCAGATCAGATCATCACTCATCCATCTTCTCTCGCTCCAATTAGGGTTCCTCTTCTACTTCCACCAGTAACAGGAGTCAATATGACTACGGAGCTTCTTCAAATCGAACCCGACGAACTCAGATTTGTCTTTGAATTAAAGAAACAAAGTTCATGCTTGGTTCAGCTTGGAAACAAGGCTGATCAGTATATTGCTTTTAAGGTAAAGACAACTTCACCGAAGAAATATTGCGTCAGACCCAACGTAGGCATCATCAAGCCAAAGGAAATATATGATTTTACTGTTACTATGCAAGCTCAACGCACGGCACCACCTGATATGCAGTGCAAGGACAAATTTCTGATTCAATGCACATTTGCAAAAGATAGTGGAAAGTATATTGAGGAGAAGAAACTGAAGGTAGTCCTCATCAGCCCGCCATCTTCTCCAGTTTTGCTTCCAGTAAATGGCGATACGAAACAGGATCCATCCAACGAAATCAATGTGCCAAAAGATAGGGTGCCCAGTGGNGTTGAAAACATACCTCCCCCTCTGAGGGTTTCNGCGGAAATTAAAGGTTTGGAACCAGCCCAAGCTATGAGAGAGGATAGAACAGATGAGGATATTGTCTCAAGACATGCTGAGAATGTGGGTGACATGAAGCCAGCGAAAGATGATGTGCAGTTGAATTTAGCTAAGGATTGTGAGGAATTGAAGTCAAGGCTTTGTATAATGGATTCAAAGCTAAGAGAGGCTGAGGTAACCATCATGAAGCTGAATGAGGAGAGACACATGAACAATCAAGAAAAAGCTTTGCTTAAGAAAGAGTTGGAGGTGTTGAAAAGGACAATCAATCCGAAAGGAGTTCAGGAAGGCTTTCCNTTATTGTTTGTCTGCATGGTTGCTCTTATCAGCGTGGCAGTCGGATACTATATTCATCCTGTCATCCATTAGGGATAAAACTGCGTGTGCAGGATAGCAGAATTTCTTAAATCAAGGATTTCTCCTTAATGGTTAGATAGAGGATGGTTCATTGTTTATTATGGTTTTACTCGACAGATGTTAATATGTGATATGGGAATGCTTGTAAAGTGAACTACGCCTTTTACATAGAAGCATAATAAGCAGCCTTTTGATATTTTTAACCGACATCACAGGCCTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	315604	320247	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005789 endoplasmic reticulum membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004573.1	PF00635.21	Motile_Sperm	6	99	2.80E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.628
SRR1783600	control	26.188
SRR1783602	moderate drought stress	19.715
SRR1811619	moderate drought stress	19.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.286
DRR006520	Root Summer glycyrrhizin high producing strain	31.540
DRR006521	Root Winter glycyrrhizin high producing strain	24.152
DRR006522	Root Winter glycyrrhizin high producing strain	24.090
DRR006523	Root Summer glycyrrhizin low producing strain	27.694
DRR006524	Root Summer glycyrrhizin low producing strain	27.936
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.332
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.961

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.596
SRR2868004	Drought Stress (root)	27.081
SRR2967015	Control (root)	27.126

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.508
SRR9715740	Leaf	13.144
SRR9715741	Leaf	13.682
SRR9715739	Root	5.382
SRR9715742	Root	14.848
SRR9715743	Root	13.858

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.114
SRR8749028	MeJA induced 9h	24.288
SRR8749029	MeJA induced 9h	25.715
SRR8749030	Uninduced	10.283
SRR8749031	Uninduced	7.266
SRR8749032	Uninduced	9.277

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	59.623
SRR8400027	Control - Root	62.902