Gene detail

Gene detail information of Glyur000055s00004572

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05030.1	0	sodium hydrogen exchanger 2
NR	XP_007154223.1	0	hypothetical protein PHAVU_003G1006000g [Phaseolus vulgaris]
COG	YP_003894363.1	6.00E-19	sodium/hydrogen exchanger [Methanoplanus petrolearius DSM 11571]
Swissprot	tr\|Q56XP4\|NHX2_ARATH	0	Sodium/hydrogen exchanger 2
trEMBL	tr\|V7C7T0\|V7C7T0_PHAVU	0	Sodium/hydrogen exchanger {ECO:0000256\|RuleBase:RU003722}

Sequence

Transcript Sequence

>Glyur000055s00004572.1
ATGGCAATGGCTGGTGTGTACGAGAAAGTAACAACGGTGATGACGTCAGATCACGGTTCGGTGGTGTCAATGAACCTCTTCGTTGCGCTGCTCTGCACTTGCATCGTCATCGGTCACTTGTTGGAGGAGAACCGTTGGATCAATGAATCCATCACTGCCCTTCTCATTGGTCTCTGTACTGGTGTGCTTATATTGCTTACAACTGGAGGAAAAAGCTCTCATATTTTGGTCTTCAGCGAAGACCTTTTCTTCATTTACCTCCTCCCACCCATCATTTTCAATGCCGGGTTTCAGGTCAAGAAGAAACAATTTTTCCGCAATTTCATGACCATAATGCTCTTTGGTGCAATTGGTACACTCATATCATTCTGCATCATATCACTAGGTGCCATACACTTTTTCCAGAAATTAAATATTGGTTCCCTCAAGATTGGAGATTATCTAGCAATTGGAGCAATATTTTCAGCAACAGATTCTGTTTGCACNTTGCAGGTTCTTAATCAGGATGAGACACCTCTACTATACAGCCTGGTCTTTGGGGAAGGGGTAGTAAATGATGCTACCTCCGTNGTACTCTTCAAAGCAATTCAGAATTTTGACCTCTCCCACATTGACTTAAACACTGCTTTAGAGTTAATAGGAAATTTCTTATATTTATTCATAGCAAGCACTGTGCTGGGAATCTTTGCTGGATTACTTAGCGCNTACATTATTAAACAGCTCTATTTTGGCAAGTTGATAAGGCATTCTACAGACCGTGAGGTTGCTCTCATGATACTCATGGCTTACCTTTCTTATATGCTTTCTGAACTATTTTCTTTAAGTGCCATTCTGACTGTGTTCTTCTGCGGCATTCTTATGTCTCACTATACGTGGCATAATGTGACGGAAAGTTCAAGAGTGACAACAAAGCATGCTTTTGCTACTTTGTCATTCATTGCTGAGATCTTTATCTTCCTTTATGTTGGGATGGATGCACTAGATATAGAGAAGTGGCGATTTGTAAGTCAAAGCCCAAAAAAATCAATTGGGGTCAGTTCGTTGCTGTTGGCACTTATTCTAGTGGGAAGAGCTGCATTTGTTTTCCCTCTGTCCTTCCTATCCAACCTCTCTAAGAAGTCTCCATCTGAGAAAATCGAGTTAAAGCAACAAGTAACAATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTTTCTATTGCACTCGCTTACAATCAGTTTACCAGGCTAGGCCATACTAAATTGCGTGAGAATGCCATCATGATCACTAGTACTATCACTGTTGTACTCTTCAGCACAGTGGTGTTTGGGTTGATGACGAAGCCACTTGTGAGGTTATTGCTTCCTTCCTCAAAACACACAACCAGCATACCGTCCCCACCATCAACTCCCAAATCATTTACTGTGCCACTTCTTGGCAATGGACGACGGGATTTAGAGGATGGTGGCACCCAAAATGGGCATCAACAANCAAGCCGCTTGCGTATGCTCCTAAGTCGTGGGGTACACCACTACTGGCGCAAGTTTGATGATTCTTTCATGCGACCCGTCTTTGGTGGGCGTGGTTTTGTACCTTACGTTCCTGGTTCACCCCTTGAACAAAGTGTTCATCAGTGGCATTAAGTGAAACTTAATAAGAAGATAGTATNCTAATGATATGTGATAATTAAGTGGTGTGGGTATGACATAAATTTGGCTTTGGTTTGTGCACTTTTGTCAATAGTTAGAAGATTTCAACTTCATGTGACTNATACTTCCAAAAGAGAAGAGAAAGAAGAAAAATATACGAGGGAATTAAGAAAGAAGTTATAGGAGGAATATAATATAATGCGGGCTTTTTATTTTTCCCGGTTTTTGCTGACATAGAAAAAGAGGGAGNTGTTTGCTTGTAAGTTAAATTGTAACTTCACGCCGGTCAGGCCATTCAAATTTTTGGTGTGTGTACATGTTATTATGGATGTAAACGTCGTGAGTTGTGACATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	311254	315254	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0006814 sodium ion transport

GO:0006885 regulation of pH

GO:0009651 response to salt stress

GO:0055075 potassium ion homeostasis

GO:0055085 transmembrane transport

cellular_component

GO:0005774 vacuolar membrane

GO:0005886 plasma membrane

GO:0016021 integral component of membrane

molecular_function

GO:0015299 solute:proton antiporter activity

GO:0015385 sodium:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004572.1	PF00999.16	Na_H_Exchanger	29	444	5.50E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.928
SRR1783600	control	1.922
SRR1783602	moderate drought stress	1.115
SRR1811619	moderate drought stress	1.053

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.932
DRR006520	Root Summer glycyrrhizin high producing strain	3.968
DRR006521	Root Winter glycyrrhizin high producing strain	0.338
DRR006522	Root Winter glycyrrhizin high producing strain	0.329
DRR006523	Root Summer glycyrrhizin low producing strain	4.088
DRR006524	Root Summer glycyrrhizin low producing strain	4.211
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.375
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.378

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.098
SRR2868004	Drought Stress (root)	5.840
SRR2967015	Control (root)	5.782

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.573
SRR9715740	Leaf	0.096
SRR9715741	Leaf	0.148
SRR9715739	Root	1.603
SRR9715742	Root	2.051
SRR9715743	Root	2.105

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.169
SRR8749029	MeJA induced 9h	0.031
SRR8749030	Uninduced	0.064
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.115

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.026
SRR8400027	Control - Root	3.747