Gene detail information of Glyur000055s00004568 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06390.1 | 7.00E-23 | Uncharacterised protein family (UPF0497) |
| NR | AFK39780.1 | 1.05E-104 | unknown [Lotus japonicus] |
| Swissprot | tr|C6SVQ5|CSPL7_SOYBN | 1.00E-101 | CASP-like protein 1D2 |
| trEMBL | tr|I3SHN8|I3SHN8_LOTJA | 4.00E-105 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 292751 | 294693 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004568.1 | PF04535.7 | DUF588 | 31 | 171 | 8.50E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.929 |
| SRR1783600 | control | 34.055 |
| SRR1783602 | moderate drought stress | 48.887 |
| SRR1811619 | moderate drought stress | 48.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.038 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.077 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.139 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.180 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.230 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.349 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.617 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 239.780 |
| SRR2868004 | Drought Stress (root) | 605.059 |
| SRR2967015 | Control (root) | 775.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.272 |
| SRR9715740 | Leaf | 7.934 |
| SRR9715741 | Leaf | 7.239 |
| SRR9715739 | Root | 137.491 |
| SRR9715742 | Root | 56.326 |
| SRR9715743 | Root | 71.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1082.984 |
| SRR8749028 | MeJA induced 9h | 1867.523 |
| SRR8749029 | MeJA induced 9h | 1828.677 |
| SRR8749030 | Uninduced | 2007.130 |
| SRR8749031 | Uninduced | 1860.131 |
| SRR8749032 | Uninduced | 1800.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 191.034 |
| SRR8400027 | Control - Root | 210.415 |