Gene detail

Gene detail information of Glyur000055s00004557.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06400.2	0	chromatin-remodeling protein 11
NR	XP_007154235.1	0	hypothetical protein PHAVU_003G101700g [Phaseolus vulgaris]
COG	YP_004194378.1	2.00E-87	SNF2-like protein [Desulfobulbus propionicus DSM 2032]
Swissprot	tr\|Q8RWY3\|ISW2_ARATH	0	Putative chromatin-remodeling complex ATPase chain
trEMBL	tr\|V7C7Y4\|V7C7Y4_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26229.1}

Sequence

Transcript Sequence

>Glyur000055s00004557.1
CGAAACCCTCGATCTGAGAAAACCAACCATGGGGAGAACCTCAAAGGCTCAGGTTTCAAACGACTCCTCAAATTCCGAGGAGGAGGAAGAGGAGGAGAACGCCAATGAGCAGATCGAAGAGGACGATGANGAACTCGAAGAGGTGGCTCGTTCCGCTAGCTCCGACGATGAGGACAATGCGCCAGATGAAGAAGCCGAAGACGGTGAAGGTGATGACGATAAACAGGATGAAAGTAATATTGATCCTGAGGTTAGCAAGCGCGAGAAGGCCAGATTAAAAGAAATGCAAAAGTTGAAGAAACAGAAGATTCAGGAGATATTGGATGCACAAAATGCATCCATTGATGCTGACATGGTGCGTAACAATAGAGGAAAGGGTCGATTGAAGTATCTCTTGCAGCAAACTGAGCTGTTTGCTCATTTTGCCAAAGGTGATCAATCCTCATCGCAAAAGAAGTCAAAGGGAAGGGGACGCCATGCATCAAAAGTGACTGAAGAAGAGGAAGATGAAGAGTACCTTAAAGAAGAAGAAGATGGTTTATCAAACACACGGTTGATGACTCAACCAACATGTATCCAGGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTAGCAGACGAAATGGGCCTTGGTAAAACCTTACAAACTATATCTTTGTTGGGTTATTTACATGAGTTCAGAGGAATAACGGGGCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGACGCTTTTGTCCTGTTTTACGTGCAATAAAGTTCCTTGGTAACCCCGAAGAAAGGAGGCATATCAGAGAGGATCTATTGGTTGCTGGAAAATTTGATGTGTGTGTGACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCATTGCGTCGATTTAGTTGGCGTTACATAGTTATTGATGAAGCCCATCGAATAAAAAACGAGAACTCCCTCCTGTCCAAAACGATGAGGCTATACAATACAAACTATCGACTCCTTATAACCGGCACTCCACTGCAGAACAATCTTCACGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCTGAAATTTTTAGTTCCGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGATAATGACCAACAGGAGGTTGTTCAACAGCTACACAAGGTCCTCCGTCCATTTCTTCTTCGAAGGTTGAAATCAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAGGTAGGCATGTCCCAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTTGAGGTTGTGAATGCTGGTGGAGAACGAAAACGTCTACTAAATATAGCAATGCAACTACGTAAATGTTGTAATCACCCGTATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTATACAACAGGAGACCATCTTATTACAAATGCTGGTAAAATGGTTCTACTGGATAAATTACTTCCCAAACTAAAAGAGCGGGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTACTTGATGTTTCGTGGATACCTATATTGTCGCATAGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATCGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCTACTCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGATAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGAGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTCTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCNCTTGATGCTCTGGTGATTCAACAAGGGCGATTAGCTGAGCAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGAGCTGAAATGGTTTTTAGTTCCAAGGACAGTACTATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCGACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGATACTGCTGAGTTGTATGATTTTGATGATGAGAAAGATGAGAACAAATTTGATTTCAAAAAGATCGTGAGTGAAAACTGGGTTGAGCCACCAAGAAGAGAACGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCTAAAGAGCCCCGTATTCCTAGGATGCCTCAATTGCATGATTTCCAGTTTTTCAACACACANAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGCTATCTAATGCAAACACATCAGAAGAATCAGGTAAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAGCACCTGCTAGAGGAGGGATTTTCATCATGGACCCGGAANGATTTTAACACTTTCATTAGGGCATGTGAAAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGTTGGAAGGAAAAACAGAAGATGAAGTTGAAAGATATGCAGAAGTCTTCAAAGAACGATACAAGGAATTGAATGATTATGATAGAATTATTAAAAACATCGAAAGAGGGGAGGCAAGAATAGCTCGGAAAGATGAGATCATGAAAGCTATTGGAAAGAAGTTGGACCGCTACAAGAACCCTTGGCTGGAGTTGAAGATACAATATGGACAAAACAAGGGGAAGTTATACAATGAAGAATGTGATCGATTCATGATATGCATGATTCACAAACTTGGCTATGGGAATTGGGAGGAATTGAAGGCAGCGTTTCGAATGTCACCCTTGTTTCGTTTTGATTGGTTTGTAAAGTCACGCACAACACAGGAACTAACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAAGAAAACCAAGAACATGATGAGAGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCACCAAGAATTCGACTCCATCAAAGCGTGTCTTGCCAAGACAGACGGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACTATGGATGACTATATAAGCTCGGCTCCCGAATGTAACCTTTGA

Protein Sequence

>Glyur000055s00004557.1
MGRTSKAQVSNDSSNSEEEEEEENANEQIEEDDXELEEVARSASSDDEDNAPDEEAEDGEGDDDKQDESNIDPEVSKREKARLKEMQKLKKQKIQEILDAQNASIDADMVRNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLSNTRLMTQPTCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPEERRHIREDLLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIVIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTXRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEVGDPLTAEELEEKEHLLEEGFSSWTRXDFNTFIRACEKYGRNDIKSIASELEGKTEDEVERYAEVFKERYKELNDYDRIIKNIERGEARIARKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWEELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEHDERERQARKEKKLATKNSTPSKRVLPRQTESPSLKKRKQLTMDDYISSAPECNL

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	232667	242047	-

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006338 chromatin remodeling

GO:0043044 ATP-dependent chromatin remodeling

cellular_component

GO:0005634 nucleus

GO:0016589 NURF complex

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0003682 chromatin binding

GO:0005524 ATP binding

GO:0016817 hydrolase activity, acting on acid anhydrides

GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

GO:0016887 ATPase activity

GO:0031491 nucleosome binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004557.1	PF13892.1	DBINO	81	135	8.20E-05
Glyur000055s00004557.1	PF00176.18	SNF2_N	190	468	1.20E-79
Glyur000055s00004557.1	PF00271.26	Helicase_C	523	602	8.00E-15
Glyur000055s00004557.1	PF09111.5	SLIDE	894	1007	1.70E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.942
SRR1783600	control	17.120
SRR1783602	moderate drought stress	12.782
SRR1811619	moderate drought stress	12.816

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.581
DRR006520	Root Summer glycyrrhizin high producing strain	15.252
DRR006521	Root Winter glycyrrhizin high producing strain	6.997
DRR006522	Root Winter glycyrrhizin high producing strain	6.843
DRR006523	Root Summer glycyrrhizin low producing strain	10.721
DRR006524	Root Summer glycyrrhizin low producing strain	10.813
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.669
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.530

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.616
SRR2868004	Drought Stress (root)	22.468
SRR2967015	Control (root)	20.890

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.281
SRR9715740	Leaf	5.782
SRR9715741	Leaf	6.075
SRR9715739	Root	0.823
SRR9715742	Root	5.436
SRR9715743	Root	4.804

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.608
SRR8749028	MeJA induced 9h	38.153
SRR8749029	MeJA induced 9h	24.773
SRR8749030	Uninduced	5.334
SRR8749031	Uninduced	6.054
SRR8749032	Uninduced	4.884

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.384
SRR8400027	Control - Root	27.383