Gene detail information of Glyur000055s00004552.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20960.1 | 2.00E-45 | Cytidine/deoxycytidylate deaminase family protein |
| NR | XP_003521898.1 | 7.53E-72 | PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic-like [Glycine max] |
| COG | YP_007064189.1 | 2.00E-42 | diaminohydroxyphosphoribosylaminopyrimidine deaminase [Calothrix sp. PCC 7507] |
| Swissprot | tr|Q8GWP5|RIBD_ARATH | 8.00E-66 | Inactive 5-amino-6-(5-phosphoribosylamino)uracil reductase (Precursor) |
| trEMBL | tr|I1JK94|I1JK94_SOYBN | 3.00E-72 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G01270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 197436 | 200745 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11752 | ribD | EC:3.5.4.26 1.1.1.193 | Riboflavin metabolism | map00740 |
| Riboflavin metabolism | map00740 | |||
| Quorum sensing | map02024 | |||
| Quorum sensing | map02024 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.476 |
| SRR1783600 | control | 5.437 |
| SRR1783602 | moderate drought stress | 3.341 |
| SRR1811619 | moderate drought stress | 3.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.231 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.586 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.385 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.381 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.760 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.263 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.937 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.320 |
| SRR2868004 | Drought Stress (root) | 24.102 |
| SRR2967015 | Control (root) | 14.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.052 |
| SRR9715740 | Leaf | 1.693 |
| SRR9715741 | Leaf | 1.294 |
| SRR9715739 | Root | 0.688 |
| SRR9715742 | Root | 0.280 |
| SRR9715743 | Root | 0.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.543 |
| SRR8749028 | MeJA induced 9h | 10.309 |
| SRR8749029 | MeJA induced 9h | 10.232 |
| SRR8749030 | Uninduced | 11.529 |
| SRR8749031 | Uninduced | 25.650 |
| SRR8749032 | Uninduced | 9.396 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.430 |
| SRR8400027 | Control - Root | 2.298 |