Gene detail

Gene detail information of Glyur000055s00004551

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G18590.2	0	Galactose oxidase/kelch repeat superfamily protein
NR	XP_003550179.1	0	PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max]
COG	YP_006448235.1	1.00E-10	hypothetical protein Desti_3313 [Desulfomonile tiedjei DSM 6799]
Swissprot	tr\|Q9MA55\|ACBP4_ARATH	4.00E-67	Acyl-CoA-binding domain-containing protein 4
trEMBL	tr\|I1MRF7\|I1MRF7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G02680.1}

Sequence

Transcript Sequence

>Glyur000055s00004551.1
GTTCAGGGTGAGGTTTCTTGTTAACCATACAAATACAAATTCAAAACCTTTTTCTTCTTTTAACCTTTTCCTGCCATTATTGACTCTCAGGAAGAGTGCCCTTTTTCTGGGCACACCACAAAGAAACAAACAACCAAACTTGCATTTTCTTTTCTACGGTAAAAAAAAAAACAACAACTCTTTCAGTTAGTAAATGTGGCTTCCCTTTCTGGGGTTTTAGGGTTAGTGTGTCCAACTCTGTTTCTTCTTCATTCAGTTCGGTCACTGTTAAGCTGATTCCTTCCTTCCTTCTTTCTCTAACGAGCTGTGAAGAAGATGTTTGGTTTCTCTCGTCGCCGCATGAAACTTGGAAGATTGAAGGTGCAGCTTTCTGAGGGCACTCCGGGAACTAGAAGTCCTGTAAGGCACCCAAAGCGAAATGCAAACTCCAATGTCCATGGAGAAGGGGAAAGAGATGCACTTGCAGGGTCAAGTGGTCATTCTGATGAAAATGAAATTGTGTGCCACTCTTCTTCAGCTGCAGCACCTGAGATTAGTACTTGTACATCAGGCAGCTCAGAGAACTGGATGGTGTTGTCAATTGCTGGGGATAAGCCCACTCCTAGATTCAATGTCTGTACTCATGCCGCGGCTGTCATTGGGAATAAGATGATAGTGGTTGGTGGCGAATCTGGAACTGGGTTGTTGGATGACGTGCAGGTGCTGAATTTTGACACATTTTCGTGGACCACAGCATCCTCAAAGCTTTACTTGTCTCCCAGTAGTCTGCCACTAAAGATTCCCGCGTGCAAGGGTCATACTTTGGTTTCCTGGGGGAAAAAGGCACTCCTCATCGGAGGGAAAACTGACCCAGGAAGTGACAGAATTTCAGTATGGGCATTTGATACAGAAACAGAGTGCTGGTCACACATGGAGGCAAAGGGAGACATACCGGTTGCTCGCAGTGGTCACAGTGTTGTTAGGGCGAGCTCTGTTTTAATATTGTTTGGGGGTGAAGATGCAAAAAGGAGGAAACTGAATGATCTACATATGTTTGATCTCAAGTCCTTGACGTGGCTTCCACTTCACTACACGGGAACAGCACCTTCTCCAAGATTCAACCATGTAGCAGCTCTTTATGATGATAAAGTTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATCTATATTCACTTGACTTTGAAACAATGGCATGGTCAAGAGTAAAGATTCGAGGTTTCCATCCGTCACCTAGAGCTGGTTGTTGTGGCATTCTATGTGGTACTAAATGGTATATTACAGGGGGTGGAAGCAGGAAAAAACGACATGGAGAGACTCTGATATTTGATATTGTGAAAAATGAATGGTCTTTGACAGTCACTTCACCTCCATCTTCTATCACTACCAACAAGGGTTTCAGCCTAGTACTTGTGCAGCACAAGGAAAAGGACTTTCTTGTTGCATTTGGGGGATCCAAGAAAGATCCGTCAAATCAGGTGGAAGTGTTGATAATGGATAAGAATGAAACAGCACCGAGAAGACAATCAACTCCCAGTAAAGGACCAGCATCCATACTTCTTGAAAAACATTCATCATCCACTAGATTGGCCTCTCAACTTAATGATTGTTCCCAACGTTTAGTTGACTCTGTTGCTAGACAAACTCTAGCATCTGCAGTTGAACATGGTTCTGGAAGGAAATCTCTGTCGGAGTCCCTGGTTGTAGATCCCAATTATCCCCCAACGAATGTCTCCCTTCGGAAGCAATTCGATCGTGATGAATATAATACAGATGTCAAGATGGACAAGAACTCAGATGAAAGTTCTTTCCCTCGGGCGGCAGATCACAGAACAAACGAAAATGACCATGGTAAACAGATGAGCATTGGTGGAGGCAAGATCAATATGGAAGAACAACAGGTGTTGGCATCTGGAATTTCAAATCAACAAAACCAAGTATTCGAAAACGACACGCTAGAAAGTGATAACGTATCGGGATCACTGTCTACTGCTTCAAACATCTATCATTACTATGAAAGTAAAGTGGCTGCCCTGATAAGGAAAAATGGGATTCTGGAGGGTCAATTGGCAGCTTCACTGGCAGGCAGAGAAGCCGCGGAGAAAAGCTTAGCATCTGTTCTCAAAAGCCGGCAGGAGATGGAGAAGAAATTGGCGGATGCGCAGAAGGAGATGGAGTTACTGAGGGAGAAGCTAGCCGGTCTAGAGCTCGCCCAAGAAGAGGCCAACAACCTATCAAACATTGTCCATTCTGACAATGTTCGGCTCGAGCATGACGTGGCCTTCCTCAAAGCTGTCTTAGATGATACACAAAAGGAGTTGCACTCAACAAGAGGAGTTATTGCAGGAGAAAGAGCTAGGGCATTCCAACTACAGTACGAAGTTTTTCATCTCAAACAGAGATTGCAATCGATGGAAAATCGAGCATCGAATACGCCCAGGAAACCGTTTCATCATGTGCAGTGAGAAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	187700	193818	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004551.1	PF01344.20	Kelch_1	101	142	1.40E-05
Glyur000055s00004551.1	PF13418.1	Kelch_4	208	258	2.00E-08
Glyur000055s00004551.1	PF13418.1	Kelch_4	259	301	5.00E-10
Glyur000055s00004551.1	PF13418.1	Kelch_4	310	356	0.00071

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.479
SRR1783600	control	6.437
SRR1783602	moderate drought stress	10.359
SRR1811619	moderate drought stress	10.416

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.838
DRR006520	Root Summer glycyrrhizin high producing strain	9.980
DRR006521	Root Winter glycyrrhizin high producing strain	0.358
DRR006522	Root Winter glycyrrhizin high producing strain	0.348
DRR006523	Root Summer glycyrrhizin low producing strain	9.180
DRR006524	Root Summer glycyrrhizin low producing strain	9.055
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.743
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.712

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.248
SRR2868004	Drought Stress (root)	9.777
SRR2967015	Control (root)	13.524

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.292
SRR9715740	Leaf	5.084
SRR9715741	Leaf	5.647
SRR9715739	Root	1.963
SRR9715742	Root	8.907
SRR9715743	Root	7.984

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.788
SRR8749028	MeJA induced 9h	16.114
SRR8749029	MeJA induced 9h	12.324
SRR8749030	Uninduced	1.916
SRR8749031	Uninduced	0.716
SRR8749032	Uninduced	1.891

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.832
SRR8400027	Control - Root	20.963