Gene detail information of Glyur000055s00004545.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47850.3 | 4.00E-109 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | XP_003550189.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 58-like [Glycine max] |
| Swissprot | tr|Q84W91|C3H32_ARATH | 3.00E-151 | Zinc finger CCCH domain-containing protein 32 |
| trEMBL | tr|K7MJK6|K7MJK6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G02720.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 153947 | 157505 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004545.1 | PF00642.19 | zf-CCCH | 69 | 94 | 9.40E-10 |
| Glyur000055s00004545.1 | PF00642.19 | zf-CCCH | 115 | 139 | 1.50E-08 |
| Glyur000055s00004545.1 | PF00642.19 | zf-CCCH | 161 | 185 | 7.80E-09 |
| Glyur000055s00004545.1 | PF00642.19 | zf-CCCH | 323 | 348 | 6.60E-10 |
| Glyur000055s00004545.1 | PF00642.19 | zf-CCCH | 386 | 409 | 2.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.243 |
| SRR1783600 | control | 20.419 |
| SRR1783602 | moderate drought stress | 19.885 |
| SRR1811619 | moderate drought stress | 20.028 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.383 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.799 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.335 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.697 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.448 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.091 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.410 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.657 |
| SRR2868004 | Drought Stress (root) | 16.250 |
| SRR2967015 | Control (root) | 16.297 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.433 |
| SRR9715740 | Leaf | 6.074 |
| SRR9715741 | Leaf | 6.543 |
| SRR9715739 | Root | 7.796 |
| SRR9715742 | Root | 12.042 |
| SRR9715743 | Root | 10.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.626 |
| SRR8749028 | MeJA induced 9h | 23.965 |
| SRR8749029 | MeJA induced 9h | 14.418 |
| SRR8749030 | Uninduced | 6.455 |
| SRR8749031 | Uninduced | 4.418 |
| SRR8749032 | Uninduced | 4.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.316 |
| SRR8400027 | Control - Root | 15.339 |