Gene detail

Gene detail information of Glyur000055s00004538.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G09020.1	homolog of yeast sucrose nonfermenting 4
NR	XP_004508285.1	PREDICTED: sucrose nonfermenting 4-like protein-like [Cicer arietinum]
Swissprot	tr\|Q944A6\|SNF4_ARATH	Sucrose nonfermenting 4-like protein
trEMBL	tr\|G7JKB3\|G7JKB3_MEDTR	Sucrose nonfermenting-like protein {ECO:0000313\|EMBL:AES91833.2}

Sequence

Transcript Sequence

>Glyur000055s00004538.1
ATTAAATTTTTATGTTTTTGGCTCGAGCGTAAATTTTTTTCAGCAACTATTTCAGGTTTCGTCTTTTTTTTTTAATGGTTGGATTCTTTCGTAGCTACCCATCCTCGATTTTCTCAACCTGTTTCCTCTTGTGTCTCAATAGGGTTTCTATTCTTTTCCTTTCCCTCTCTGTGCCTTCTCTCTTTTTTCCCCAGAAATTCTTAAATTCGTCGACGTTCGAGGCTCGATTTGTGCATTGAATTTGGTGCTGCATTTGCTCGAATTTGCTCTCTACGAATTGAAGAAGCTGAAATGAGGTGATGAAGTATAGTTGTTGGAGGGAGCTCTGAGTGTAGCACTCTGAATTTGGTAGAGTAGAATGTTCAGTCCGAGCATGGATTCTGCACGTGATGCGGGTGGTGTTGCTGCAGGGACGGTGCTAATTCCCATGCGGTTTGTGTGGCCATATGGGGGAAGAAGTGTGTATCTCAGTGGTTCCTTTACACGGTGGTCTGAGCTTCTGCAAATGTCGCCAGTCGAAGGTTGCCCAACTGTGTTTCAAGTTATCCATAGCTTAGCCCCTGGTTATCATCAGTACAAGTTTTATGTTGATGGAGAATGGCGGCATGACGAGCATCAACCTTATATATCTGGAGAATATGGGATAGTTAACACTGTTTTATTGGCTACTGATCCTAATTTCGTACCTGTTTTACCTCCAGACATAGTTTCTGGATCTAACATGGATGTGGATAATGAGGCTTTTCGGCGAGTGGTCCGATTGACAGATGGTACGTTGAGTGAGGTGTTGCNGAGAATATCAGATGTTGATGTACAGACCTCACGCCAGCGTATTTCTGCATTCCTATCTATGCGCACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTACCTTGGATGTTGATCTGCCAGTGAAACAGGCATTTCACATATTACATGANCAGGGAATTCCTATGGCTCCTCTTTGGGACTTCTGTAAGGGGCAGTTTGTTGGAGTTCTCAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTAGGAAATCACGGGTCCAATCTGACAGAAGAGGAGCTTGAAACCCATACCATATCAGCTTGGAAAGAAGGAAAATGGACAACATTTTCTAGACGTTTTATCCATGCAGGGCCATACGAAAATTTGAAAGATGTTGCTGTGAAGATTCTGGAAAATGGAATTTCAACAGTTCCTATTATCCATTCATCTTCTGAAGATGGCTCATTTCCACAACTACTACATCTTGCTTCACTTTCGGGAATCCTTAAATGCATTTGCAGGTATTTTAGGCATTGTTCTAGTTCATTGCCTATACTTCAACTTCCAATTTGTGCAATTCCTGTGGGCACATGGGTGCCCAAAATTGGGGAGTCAAATCGCCGGCCTCTAGCAATGTTGAGGCCAAATGCTTCGCTTACTTCAGCCCTAAACTTATTAGTTCAAGCCCAAGTAAGTTCAATACCAATAGTTGATGATAGTGACTCGTTACTGGATATATATTGTCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACACATATTAATCTGGATGAAATGACTGTTCATCAGGCATTGCAGTTGGGCCAGGATTCTTTTAATCCTTATGAGCTGAGAAGTCAAAGATGTCAAATGTGCTTGCGAACCGATTCTCTGCATAAAGTGATGGAGCGTTTGGCAAACCCAGGTGTGCGGCGGCTTGTGATAGTGGAAGCCGGGAGCAAGCGCGTCGAAGGCATCATATCACTGAGCGACATATTTAAGTTTTTCCTTGGTTAGTTTGGATTGGTGACTGACCATGTTTGACAGTTAGTGCGGTGGTCGTCGTGTTGCGACCGACGTCTTCTGCATCGGCCCAGGCCCAACCACTAAAATGAGAGATTCCCAGAGCTTTTACACAGTGATTTGATCGTTATTTCATTGAAATTTGAAATACAATTGGATCGGCCTCTTGCTTCAGTGCCTTGTTTTAAGATTTTAGGCTTAGAGAAAAGAGGCCTGTAAATTTCGAGTTTTCTTTTTTTATTGTCCCAAAATTATTCGTCTCCCCCCAATTCATATTATTATCTTCAAATATCTTGTGCTCCTGATACAGATATCTGTAATCGTTCCATATTGTGAAGATACAAAGTTTTTTCGGGGGAAAAAAATTAATGGGAGGACGAGCATTTGAAATACTATTGTTTTGTTGACTAGCTTTAGTTCCCTTGTTGTATCGAGAAAAAAATGCATGGTTGGCATTGTCAAATCGGTGATGGGTAAATATTTTCTTTTATTTCCTCTACTTTTATTTTTCGCCGCCAGTAAGTTGGGGTGTATGCTAAACGTGTTACTTTTAGATTAGAAATCTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	103820	112053	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004538.1	PF00571.23	CBS	177	225	0.0002
Glyur000055s00004538.1	PF00571.23	CBS	258	313	5.70E-06
Glyur000055s00004538.1	PF00571.23	CBS	347	392	0.00012
Glyur000055s00004538.1	PF00571.23	CBS	431	480	3.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.419
SRR1783600	control	16.332
SRR1783602	moderate drought stress	21.597
SRR1811619	moderate drought stress	21.505

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.747
DRR006520	Root Summer glycyrrhizin high producing strain	17.648
DRR006521	Root Winter glycyrrhizin high producing strain	18.010
DRR006522	Root Winter glycyrrhizin high producing strain	17.756
DRR006523	Root Summer glycyrrhizin low producing strain	17.815
DRR006524	Root Summer glycyrrhizin low producing strain	17.735
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.725
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.573

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.065
SRR2868004	Drought Stress (root)	42.153
SRR2967015	Control (root)	37.871

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.925
SRR9715740	Leaf	31.169
SRR9715741	Leaf	31.814
SRR9715739	Root	16.715
SRR9715742	Root	23.709
SRR9715743	Root	22.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.547
SRR8749028	MeJA induced 9h	28.075
SRR8749029	MeJA induced 9h	20.187
SRR8749030	Uninduced	32.780
SRR8749031	Uninduced	21.504
SRR8749032	Uninduced	32.276

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.608
SRR8400027	Control - Root	36.349