Gene detail information of Glyur000055s00004537 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15730.1 | 2.00E-58 | CW-type Zinc Finger |
| NR | XP_006600343.1 | 0 | PREDICTED: uncharacterized protein LOC100793863 isoform X1 [Glycine max] |
| trEMBL | tr|K7MJL6|K7MJL6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G02760.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00055 | 94640 | 102408 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000055s00004537.1 | PF07496.10 | zf-CW | 622 | 668 | 8.60E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.962 |
| SRR1783600 | control | 6.021 |
| SRR1783602 | moderate drought stress | 8.266 |
| SRR1811619 | moderate drought stress | 8.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.277 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.261 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.948 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.803 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.902 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.060 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.687 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.272 |
| SRR2868004 | Drought Stress (root) | 14.186 |
| SRR2967015 | Control (root) | 14.083 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.945 |
| SRR9715740 | Leaf | 3.344 |
| SRR9715741 | Leaf | 5.239 |
| SRR9715739 | Root | 0.724 |
| SRR9715742 | Root | 3.110 |
| SRR9715743 | Root | 3.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.832 |
| SRR8749028 | MeJA induced 9h | 7.106 |
| SRR8749029 | MeJA induced 9h | 1.988 |
| SRR8749030 | Uninduced | 3.502 |
| SRR8749031 | Uninduced | 5.471 |
| SRR8749032 | Uninduced | 2.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.811 |
| SRR8400027 | Control - Root | 11.959 |