Gene detail

Gene detail information of Glyur000055s00004535.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G02570.4	cullin 1
NR	XP_003550217.1	PREDICTED: cullin-1-like isoform 1 [Glycine max]
Swissprot	tr\|Q94AH6\|CUL1_ARATH	Cullin-1
trEMBL	tr\|I1MRG8\|I1MRG8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G02800.1}

Sequence

Transcript Sequence

>Glyur000055s00004535.1
TCTCACTTTTGATTGATATATCTATCGATTTTGATTTTTCATGTGCAATTATTGATTAAACATTTGTAATTTGATTGCAGGTTTTTTTGGGGTTTTTTTTATTATTATTATTTAATCTGCAGAACATGACAATGAGTGAGCGGAAGACTATCGACTTAGAACAAGGATGGGATTTTATGCAGAAGGGCATCACCAAGCTCAAGAANATTCTAGAAGGCTTGCCTGAGCCTCAGTTCAGCTCCGAGGACTACATGATGCTTTATACGACCATCTACAATATGTGCACCCAAAAGCCTCCCCATGACTATTCCCAACAACTGTATGACAAGTACAGGGAGTCATTTGAAGAGTACATCATATCAACCGTGTTACCTTCTTTGAGAGAAAAGCATGATGAATTTATGTTAAGAGAACTTGTAAAGAGATGGGCAAACCATAAAATTATGGTCAGGTGGCTTTCTCGCTTCTTTCACTATTTGGATCGCTACTTTATTGCTCGGAGGTCACTTCCACCCCTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGTGAGAGATGCAGTTATTTCGCTTATTGATCAAGAACGTGAGGGAGAGCAGATTGATCGAGCTCTACTAAAGAATGTATTAGATATATTTGTTGAAATCGGAATGGGGCAAATGGACCACTATGAGAATGATTTTGAAGATGCCATGCTCAAAGACACTTCTGCTTATTATTCCCGGAAGGCTTCAAATTGGATTCTAGAAGATTCTTGTCCTGGTTATATGCTCAAGGCTGAGGAGTGCCTAAGACGGGAGAAAGATAGGGTTGCTCATTACTTGCACTCTAGTAGTGAGCCAAAGTTATTAGAGAAAGTTCAACATGAGCTGTTATCTGTGTATGCAAACCAACTCCTTGAGAAAGAGCACTCTGGATGTCATGCTTTACTTAGAGATGACAAGGTCGAAGACTTGTCAAGAATGTTCAGGCTATTTTCTAAAATACCCCGCGGCTTGGATCCTGTTTCTAGTATATTTAAGCAGGTTGGTGACCATGTTACNACTGAAGGTATGGCATTGGTGAAGCAGGCTGAAGATGCAGCTAGTAACAAAAAGGCAGATAAGAAGGATATTGTTGGTACGCAGGAACAGGTTTTTGTTCGGAATGTGATTGAGCTGCATGACAAGTACCTGGCATATGTGAATGAATGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTTAAGGAGGCTTTTGAGGTCTTTTGCAACAAAGGGGTTGCTGGAAGCTCAAATGCAGAACTTCTTGCCACTTTTTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTGGTAAAGCTGCTCGCNTATATTAGTGACAAAGATTTGTTTGCTGAGTTTTATAGGAAGAAGCTTGCTCGGAGGCTTCTTTTTGACAAGAGTGCCAATGACGATCATGAGAGAAGCATTTTGACAAAATTGAAGCAACAGTGTGGTGGACAGTTTACCTCAAAGATGGAAGGAATGGTTACCGATTTGACGCTAGCAAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAGCAATAATCCTAATGCAGACCCTGGAATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTAAATCTTCCAGCAGAAATGATTCGGTGCGTTGAAGTTTTCAAAGAATTTTATCAGACTAAAACAAAGCACAGAAAACTCACATGGATTTACTCCTTGGGTACCTGCAACTTAAGTGGGAAATTTGAACCGAAAACCATTGAGCTGATTGTTACAACCTACCAGGCTTCGGCATTGCTGCTTTTTAATTCCTCAGATAGACTGAGTTATTCGGAGATAATGACTCAGTTAAACTTATCGGATGAGGATGTTATCAGACTGCTCCACTCCTTGTCATGTGCCAAGTACAAGATTCTTAACAAGGAACCAAACACAAAAACGATATCAAACACTGATCATTTTGAATTTAATTCAAAATTTACTGACAAAATGAGGAGGATCAAGATTCCTCTACCTCCTGTGGATGAGAAGAAAAAGGTAATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGGAAAGTTTTGGGCTACCAACAGTTAGTTATGGAGTGTGTCGAGCAGTTGGGTCGCATGTTTAAGCCCGATGTCAAGGCAATTAAAAAGCGGATTGAAGATTTGATTTCTCGAGACTACTTGGAAAGAGACAAAGATAATCCAAACATGTTTAAGTACTTGGCTTGATGTGATCATATATGATTGTGCAAATGAAGTGGTTGCTGCAAATAGCAAAACAAGAGAGGATCAAAAGAGGAGCTGNCAGTGCTTGTACATTTTACCTCCATCCATGTCCAGTTATGGACTACTGTTATAGATGTGTGCTCAGGTTGGAACATTGTAATCAATCGGGTCGGGTCGGGTCGTTCCAGCTCACTGGTACCTTCGCCAGCTTTTTTTTTGCTTTTGATTGCTGCAATTCCATATTGAAACCAAAAAAGGAAAAAGAAAAAGGTANTGTGTAACTCCAGTGGAACTGAATTTTGGTTATCAGCTTAGAAATCATCAGGTGAATGAGTATGTCTTTTTAAATCTAAACCCTACAACAGCCATGGTGCTTTGCGTTAGTTGTCTATGATCATATTTCACTGCGACAATTACTTCATTTTCTAGTGTCTTGTGATATTTGAAATCTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	82850	89514	+

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex

molecular_function
GO:0031625 ubiquitin protein ligase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004535.1	PF00888.17	Cullin	15	651	2.40E-186
Glyur000055s00004535.1	PF10557.4	Cullin_Nedd8	674	741	1.40E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	60.997
SRR1783600	control	60.959
SRR1783602	moderate drought stress	62.492
SRR1811619	moderate drought stress	61.937

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	103.799
DRR006520	Root Summer glycyrrhizin high producing strain	102.197
DRR006521	Root Winter glycyrrhizin high producing strain	88.325
DRR006522	Root Winter glycyrrhizin high producing strain	85.902
DRR006523	Root Summer glycyrrhizin low producing strain	105.456
DRR006524	Root Summer glycyrrhizin low producing strain	104.208
DRR006525	Leaf Summer glycyrrhizin high producing strain	41.225
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.168

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	106.695
SRR2868004	Drought Stress (root)	116.230
SRR2967015	Control (root)	108.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	61.018
SRR9715740	Leaf	73.258
SRR9715741	Leaf	68.364
SRR9715739	Root	7.743
SRR9715742	Root	57.705
SRR9715743	Root	54.416

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	66.259
SRR8749028	MeJA induced 9h	75.341
SRR8749029	MeJA induced 9h	46.600
SRR8749030	Uninduced	49.965
SRR8749031	Uninduced	60.855
SRR8749032	Uninduced	44.950

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	92.896
SRR8400027	Control - Root	87.888