Gene detail

Gene detail information of Glyur000055s00004533.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47810.1	8.00E-36	nuclear factor Y, subunit B5
NR	KHN26570.1	7.63E-68	Nuclear transcription factor Y subunit B-5 [Glycine soja]
Swissprot	tr\|O82248\|NFYB5_ARATH	1.00E-52	Nuclear transcription factor Y subunit B-5
trEMBL	tr\|A0A072TR10\|A0A072TR10_MEDTR	8.00E-68	Nuclear transcription factor Y protein {ECO:0000313\|EMBL:KEH15995.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00055	70430	70840	+

Gene family

Gene family	subfamily
Transcription Factors Family	NF-YB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0005622 intracellular

GO:0005634 nucleus

molecular_function

GO:0043565 sequence-specific DNA binding

GO:0046982 protein heterodimerization activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000055s00004533.1	PF00808.18	CBFD_NFYB_HMF	22	86	6.80E-27

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.463
SRR1811619	moderate drought stress	0.376

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.977
DRR006520	Root Summer glycyrrhizin high producing strain	1.305
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.818
DRR006524	Root Summer glycyrrhizin low producing strain	1.038
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.226
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.226

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.884
SRR2868004	Drought Stress (root)	2.031
SRR2967015	Control (root)	0.494

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.532
SRR9715740	Leaf	0.612
SRR9715741	Leaf	1.023
SRR9715739	Root	0.000
SRR9715742	Root	0.611
SRR9715743	Root	0.297

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.282
SRR8749028	MeJA induced 9h	0.999
SRR8749029	MeJA induced 9h	0.356
SRR8749030	Uninduced	0.760
SRR8749031	Uninduced	0.477
SRR8749032	Uninduced	0.848

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.823
SRR8400027	Control - Root	0.945