Gene detail information of Glyur000055s00004518


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15770.15.00E-84RNA binding
NRXP_007154269.12.32E-127hypothetical protein PHAVU_003G104500g [Phaseolus vulgaris]
COGNP_068899.19.00E-07hypothetical protein AF0058 [Archaeoglobus fulgidus DSM 4304]
trEMBLtr|V7CA90|V7CA90_PHAVU9.00E-12860S ribosome subunit biogenesis protein NIP7 homolog {ECO:0000256|PIRNR:PIRNR017190}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold0005587829345-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
----------


Gene Ontology

biological_process

GO:0042255  ribosome assembly


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003723  RNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000055s00004518.1PF03657.8UPF0113681821.40E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.640
SRR1783600control25.605
SRR1783602moderate drought stress21.135
SRR1811619moderate drought stress21.144

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain47.374
DRR006520Root Summer glycyrrhizin high producing strain47.515
DRR006521Root Winter glycyrrhizin high producing strain34.586
DRR006522Root Winter glycyrrhizin high producing strain33.469
DRR006523Root Summer glycyrrhizin low producing strain45.087
DRR006524Root Summer glycyrrhizin low producing strain43.549
DRR006525Leaf Summer glycyrrhizin high producing strain11.754
DRR006526Leaf Summer glycyrrhizin high producing strain11.344

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)31.609
SRR2868004Drought Stress (root)17.714
SRR2967015Control (root)17.955

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf6.632
SRR9715740Leaf9.126
SRR9715741Leaf4.834
SRR9715739Root27.073
SRR9715742Root17.398
SRR9715743Root18.588

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h63.914
SRR8749028MeJA induced 9h26.034
SRR8749029MeJA induced 9h32.673
SRR8749030Uninduced6.326
SRR8749031Uninduced0.986
SRR8749032Uninduced5.495

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root28.121
SRR8400027Control - Root28.402

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved