Gene detail

Gene detail information of Glyur000054s00005354

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G20180.1	9.00E-39	phytochrome interacting factor 3-like 5
NR	XP_004493862.1	0	PREDICTED: transcription factor PIF1-like isoform X5 [Cicer arietinum]
Swissprot	tr\|Q8GZM7\|PIF1_ARATH	1.00E-68	Transcription factor PIF1
trEMBL	tr\|K7KFM1\|K7KFM1_SOYBN	2.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G32747.2}

Sequence

Transcript Sequence

>Glyur000054s00005354.1
CTTTAGGTGTTTAAGCTCAATTTGAATTTTTCCTTCCTTGGCGACATGAACCACTGTGTTCCAGGTTTCGATACCCAAATGGATGACCAAGATTACCCAATATCAGGGCTACCTCGCCCCAAGAAACCCTCCATTGCAGACGATGACATCATGGAGCTGTTTTGGCAAAACGGACAGGTCGTGATGCAGAGCCAGAACCATCGTCCACTGAGAAAACCGCCGCCGGCAAGAAACTCCGACGACGCCACTCCTTCCGTCGGCGAGGGATACTCGACCGGAAGAAGAGAACCACAATCAATATCTCTTCATGCAAGAGGGCGAAATGGCTTCGTGGCTTCACTATCCAATCGACGACGACGTTCCTCCTCCATTGGATCAGAGCTTCTGCGCCGATTTTCTCTACCCTTCGCCGCTGCCGCCGACGGTTAACAACAACAACAGTGCCATGCAAACCCCGGCGCGTACGTCTCAACTGACGGAGCTCCGGCATCCGTCGACGTCGGCGGCTCCTCCTCGTCCTCCGATTCCACCGCCGAGGAGGCACGAACAGGCGACGCCGAACTTCGCGTACTTCTCGAGGCACAACAGTGTGAGAGCTAAGCCAGGACCGTCGTCGGTTCCGAGAACCACCGCGAGGGAATCCACGGTGGTGGATTCGTGCGACACGCCTGCCGCGCCGCCGCCGCAGGCTGTTTCGGAGACGGCAAGGAGCTCGGCGGAGCCCACGGAAGGAGCCGGCGGCGTGGCGGGGCCTTCGACGACGTTTGACGAACCGGGCGGTTCGAGTAGCAGCGGCGAACCGGTTCAGAAGGCGGCGGAGGAGGACCGGAAGCGGAAGGGGAGGGAGGCGGAGGAATGGGATTGGCAGAGCGAGGATATTGATTTTGAATCTGCGGAAGCAAGAAAAAATGTCTGTGGATCAACATCTACAAAGAGATCCCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGCGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGTTGTAATAAGTCTGACAAAGCTTCCATGCTGGATGAAGCAATTGAATACTTGAAGTCGCTGCAGTTACAAGTGCAGAGAGTGCAACTTATGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGGCAATGGGAATGGGGATTGGAATGGGTATGGNNATGGNAATGGGAATGAACAGACCAGTAATGCCATTTCCCAATATGTTAACTGGTTCGGCTTTGCCTGCAGCTACTGCAGCTGCTCATTTGGGACCAAGGTTCGCTATGTCTCCTTTCCACATGCCGCATCTTCCTACACCTGATTCATCGAGAATGCAAGCAGCGAATCAGTCGGATAATAATAATATGCTCACCTCAGTTGGTACACCTGATCCTAATCAGTCACGTATCCCAAACTTCACTGATCCTTATCGACAATACCTTGGTCCCCACCAGATGCAGTTTCAATTATTGCAGAATCAGGCAATGAACCGACCAAATGTTAGCAAGCCAAGTATCAGTAGGGGTCCTGAGAATCCAGAAAACNATCAGTCAGGTCACAAGTTCATAACTACATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	451195	469376	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005354.1	PF00010.21	HLH	216	262	2.20E-13
Glyur000054s00005354.2	PF00010.21	HLH	216	262	2.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.606
SRR1783600	control	10.775
SRR1783602	moderate drought stress	28.780
SRR1811619	moderate drought stress	28.471

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.591
DRR006520	Root Summer glycyrrhizin high producing strain	7.432
DRR006521	Root Winter glycyrrhizin high producing strain	33.839
DRR006522	Root Winter glycyrrhizin high producing strain	32.690
DRR006523	Root Summer glycyrrhizin low producing strain	7.597
DRR006524	Root Summer glycyrrhizin low producing strain	7.376
DRR006525	Leaf Summer glycyrrhizin high producing strain	91.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	91.212

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.187
SRR2868004	Drought Stress (root)	3.018
SRR2967015	Control (root)	3.605

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.960
SRR9715740	Leaf	73.308
SRR9715741	Leaf	64.131
SRR9715739	Root	1.709
SRR9715742	Root	10.484
SRR9715743	Root	7.485

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.803
SRR8749028	MeJA induced 9h	0.159
SRR8749029	MeJA induced 9h	0.953
SRR8749030	Uninduced	2.919
SRR8749031	Uninduced	3.767
SRR8749032	Uninduced	4.431

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.858
SRR8400027	Control - Root	11.273