Gene detail

Gene detail information of Glyur000054s00005348

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G20190.1	CLIP-associated protein
NR	XP_004493856.1	PREDICTED: CLIP-associated protein-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q8RWY6\|CLASP_ARATH	CLIP-associated protein
trEMBL	tr\|G7KZK2\|G7KZK2_MEDTR	CLIP-associating-like protein {ECO:0000313\|EMBL:AES81687.2}

Sequence

Transcript Sequence

>Glyur000054s00005348.1
CCCCGTCAAGCTAGTCTCTCTCTCTCTCTGCACTGTCTCTGTCGTGCGAGTCTCTCTCTCTCTCTCGCTCTGAATCTGACGGCTCCGCTAAATTAAGCGGTAAATAATCAATCTACCTCACCCAGTTTCTCTATCTATTCCCGTTTCATTGACGTGCTTCAAAATCCAGCGTTGTTTCTCTCTTCAACTGCAACTACAATCACTTGAACTTCACTTCGAAGTAGCAGATCTGAAGAAGCAGATCCCAAAGAATGGAGGAAGCGCTGGAACTGGCACGCGCCAAGGACACGAAGGAGAGGATGGCGGGTGTGGAGCGCCTCTACCAACTTCTAGAAGCNTCCAGAAAGAGCCTCACCTCCTCCGAGGTCACCACTCTCGTCGATTCCTGCATCGATCTCTTGAAGGACAACAACTTCCGTGTCTCTCAGGGCGCGCTTCAGGCACTCGCCTCCGCCGCCGTTCTCTCCGGCGAACACTTCAAGCTCCACTTCAACGCTCTCCTCCCCGCCGTCGTCGACCGCCTCGGCGACGCCAAGCAGCCCGTTCGCGATGCCGCACGACGACTCTTGCTCACGCTCATGGAGGTTTCTTCTCCTACNATAATTGTTGAAAGAGCAGGATCCTTTGCTTGGGCACACAAAAGCTGGAGAGTCAGAGAGGAGTTTACACGAACTGTCACATCTGCAATTAATCTATTTTCATCTACTGAGCTTCCACTTCAACGGGCTATCCTTCCTCCTGTTTTGCAGTTGCTGAATGATCCAAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAGATGTATACACAAGCTGGGCCTCAATTTCGTGATGAACTTCACCGCCACAATCTTCCTTCATCTTTGATGAAAGATATTAATGCCAAGCTAGAGGGAATTCAACCAAAAGTTCGCTCTTCAGATGGTATTCCAAGTGGTTATATTACTGGGGAAATTAAGCCTTTGAGTGTTAATCCCAAGAAAAGTAGTCCAAAGGCCAAAAGTTCATCAAGGGAAAACTCTCTTTTCGGAGGAGAAGGTGATGTCACTGAGAAACCCATAGACCCAATCAAGGTATACTCAGATAAGGAATTGGTCAGGGAATTTGAAAAGATTGCATCTACCCTTGTNCCTGAAAAAGACTGGTCAATTCGTATTGCTGCTATGCAGAGAGTTGAAGGTCTTGTTATAGGAGACCGAAGGTCTAGCATTGTAAAGCAGGCTTGCCATTTACTGTGCTTTTTGTCAAAGGAACTCTTGGGTGATTTTGAAGCATGTGCTGAAATGTTTATACCTGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCCGCAGATAACTGCATAAAGACGNTGCTACGCAACTGCAAAGTTGCTCGTGTGCTTCCCCGTATAGCCGATTGTGCTAAAAATGATCGCAATGCAGTACTTCGAGCAAGGTGTTGTGAGTATGCTCTTTTGGTCCTAGAACATTGGCCAGATGCACCGGAAATACATCGATCAGCTGATTTATATGAGGATATGATAAAGTGTTGTGTTTCAGATGCAATGAGTGAGGTACGATCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTGTTATTCAACGGTTAATAAATGAAGAGGATGGAGGAATACACAGGCGACACGCTTCACCTTCTATTCGTGATAGAGGTGCACTGATGTCAATACCCAATCAAGCCTCTGCTCACTCCAATCCACCTGGTTATGGAACTTCTGCAATTGTTGCAATGGATAGAAGTTCAAGTTTATCATCAGGGACATCTATCTCCTCTGGTGTACTTCTTTCACAAGCGAAGTCACTTGGTAAGGGTACAGAACGTAGCTTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCACTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGATCATCAAGTTTGGATCTAGAAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCGGCTGCTGTCTCTGTGTCCAATCATTTGACAAGCTCTTTAACAACAGAACCAACTGCTTCTGGTGTCAATAAAGGCAGTAATCGAAATGGTGGTCTAGGTTTGTCTGACATAATCACTCAAATACAAGCTTCCAAAGATTCTGCCAAGTTATCATATCATACTAATGTTGGCATTGAGCCTTTATCATCATTATCGTCATATTCGACTAAAAGGCATTCTGAAAGATCACAAGAAAGAAGTTCTGTTGATGATATCAGTGANATTAGGGAGGCTAGACGATTTATGAACCACAACACTGATAAGCAGTATTCGGATGCCCCTTATAGAGACGGAAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTTCAGAGGCCATTACTGAGAAAGAATGTAGCTGGACGTATGTCTGCTGGCAGGAGGAGGAGTTTCGATGATAACCAGCTATCTCTTGGAGAGATGTCAAGTTATGCAGATGGACCAGCATCTCTTCATGAAGCTTTGAGTGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCTCGGGTTGCTGCCTTTAACTATATTCACTCTTTGTTGCAGCAAGGTCCAAAGGGAACTCTAGAAGTTGTGCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGATCCTCACCATAAAGTTGCACAGGCTGCTCTTTCAACACTTGCAGATATTATTCCAGCATGCAGAAAGCCTTTTGAGGGCTACATGGAAAGAACATTACCACATGTATTTTCTCGGTTAATTGATCCTAAAGAGCTTGTTAGGCAGCCATGTTCAACAACTTTGGAAGTTGTTAGCAAAACTTACAGTATCGATTCTCTTTTACCTGCACTGTTACGCTCACTGGATGAACAAAGGTCTCCAAAGGCTAAATTGGCCGTTATTGAATTCGCAATCAGTTCCTTTAACAAACATGCAATGAATGCAGAAGGTGCTGCCAATATTGGCATACTAAAATTATGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAAAATACAAAGCTCAAAGAAGCAGCTATTACATGCATTATATCAGTGTACACTCACTTTGATTCAACCGCAGTTCTTAATTTCATTCTTAGTTTGTCGGTTGAGGAACAAAATTCTTTGAGACGAGCTCTTAAACAGTACACCCCTCGCATTGAAGTAGACCTNATGAACTATCTACAGAACAAGAAAGAGCGACAACGTTCTAAGTCNTCCTATGATCCATCTGATGTTGTGGGAACATCCTCTGAAGATGGATATGTTGGTTTCTCTAGGAAAGCTCATTACCTTGGAAGGTATTCCGCTGGTTCCATGGATAGTGATGGTGGCAGGAAGTGGAGCTCCCAAGATTCAACTCTGATGAAAGCTAGTCTTGGTCCAGCAGCTTCTGTTGAAACTCAGGAACATCCCAATCATAATCTTGAGACTGATTCTAATAGTGGCAGTCTTGGTTCAAAAACCAAAGATCTTGCTTATTCAGTCAATCCAATGGGTCAAAACTTTGGCTCCCAAACTAGCCAACTTGGACTCATGGACAGTAGCATGAATTTTGAGGATCTTTCAACTCCTCGTCTAGATGTTAACAATTTGATGTCATTAGAGCATTTAAATATTGCCGAAAGCTATGTACATGACAAAGAACATCCTTCTGAATTGGAACTTAATCATCACTCAACTGAAGCTGTAAAGTTTAACTCCATGACAGACACAGGACCCAGCATTCCTCAAATTCTTCATATGATATGCAATGGTGGTGATGGAAGCCCTGTTTCAAGTAAAAGGACTGCACTTCAGCAATTAGTTGAAGCCTCTTTAACAAACGACCATTCTGTTTGGACTAAGCTAGCCCTATCCTTCGACGGCGCCGTTGTTGGGTTGGCCTTAGCCTACGCCGCCGTTCGCTCCCTCCTCAAATTCACCGCCTCCTCCTCCGCCCTCCGCAAGCTCCGCCACGCCCCTTACCTCTCCGTCTCCGGCCTCCGCTCTCTCCTCCACGATAACGCCTCCGACGCCGATGCAAACTCCCACGATGGCAAGCTCGTAATTGTCCGCGGCACCGTCGAAGCCAAGTCCGCCGTCGACGGCAGCTGGAAATCCCTGAGACCCGGTGTCTTGGTTTCTCCCGAGTCCGGCGACAAAGCCGTCATCCTTCAAAGAACTGAAACGTGTATATACAATGAATGGAAGGGCTTAGTTGGATGGACTTCTGATCTCCGAGCCATATTTTCAAGATCTGGGAGACATGGAGAGTCTACATCCTTAAGAAAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCGGATTCCTCAGTCAGAGAACTTGCTCTTTCATTAATAGTTGAAATGCTAAAAAACAGGTTCTTACTCCTTTTTAAAGATGCCATGGAGAATTCAGTTGAGATTGTAATTGAGAAGCTGCTTCATGTAACAAAAGATATCATTCCTAAGGTCTCAAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTTATTGTCCCTCTACTGGTTACCGAGGATGAGAAAACACTTGTCATTTGCATTAATTGCTTAACAAAGCTTGTGGGCAGGCTCTCTCAGGAGGAACTGATGGCTCAGTTGCCCTCATTCCTGCCTGCTCTTTTTGAAGCTTTTGGAAACCAGAGTGCAGATGTTCGCAAGACTGTTGTTTTCTGTCTCGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATTTGCAAGGCCTTAACAGCACACAGTTGAAGCTGGTCACCATTTATGCNAATCGAATCTCACAAGCGAGGACAGGAAAAGCAATTGATGTCACTAATGATTAGCAGGTTCATTTCGAAGAAAATTTGTGGGTTTTGGATGTTGTCTTATTCATTGTCGTGTATTTGTATATTTGCGTGCATGTTTTTAGAAGTGGGTTTCCGTTGTCTTTCCTTCCTCATCTTTGTTCTATAAATATAGTTTTCTTTTTCTTTTTCTCTTTCCTTTTTTCCCTGCCAATGTTGGAATTTGGAGAGTGCTGGTGGTGGAATACAGTGCGCAAATTGTAATCTACATTGNGAAAAACACTATTGATTGTATTAAATGATTTTCAAGAATGCCTCAGTGGTTGAATATTTTGGATTTAGGTAATGTTNTGTGATGTTTAACTTCAAGCTACGAATTTTATTCCTCCAAGAGATAGGTTTTTGTTTTGTCGAGTGTGGAACGAAGGAAACAAACAAATCAGTATCTAGCAATAGCTGATTTTGG

Protein Sequence

>Glyur000054s00005348.1
MEEALELARAKDTKERMAGVERLYQLLEASRKSLTSSEVTTLVDSCIDLLKDNNFRVSQGALQALASAAVLSGEHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWAHKSWRVREEFTRTVTSAINLFSSTELPLQRAILPPVLQLLNDPNPAVREAAILCIEEMYTQAGPQFRDELHRHNLPSSLMKDINAKLEGIQPKVRSSDGIPSGYITGEIKPLSVNPKKSSPKAKSSSRENSLFGGEGDVTEKPIDPIKVYSDKELVREFEKIASTLVPEKDWSIRIAAMQRVEGLVIGDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTXLRNCKVARVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIHRSADLYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPVIQRLINEEDGGIHRRHASPSIRDRGALMSIPNQASAHSNPPGYGTSAIVAMDRSSSLSSGTSISSGVLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLDLSDKHNSSSLRSSSLDLEVDPPSSRDPPFPAAVSVSNHLTSSLTTEPTASGVNKGSNRNGGLGLSDIITQIQASKDSAKLSYHTNVGIEPLSSLSSYSTKRHSERSQERSSVDDISXIREARRFMNHNTDKQYSDAPYRDGNFRESHNSYVPNFQRPLLRKNVAGRMSAGRRRSFDDNQLSLGEMSSYADGPASLHEALSEGLSSGSDWSARVAAFNYIHSLLQQGPKGTLEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPACRKPFEGYMERTLPHVFSRLIDPKELVRQPCSTTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHAMNAEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHFDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQNKKERQRSKSSYDPSDVVGTSSEDGYVGFSRKAHYLGRYSAGSMDSDGGRKWSSQDSTLMKASLGPAASVETQEHPNHNLETDSNSGSLGSKTKDLAYSVNPMGQNFGSQTSQLGLMDSSMNFEDLSTPRLDVNNLMSLEHLNIAESYVHDKEHPSELELNHHSTEAVKFNSMTDTGPSIPQILHMICNGGDGSPVSSKRTALQQLVEASLTNDHSVWTKLALSFDGAVVGLALAYAAVRSLLKFTASSSALRKLRHAPYLSVSGLRSLLHDNASDADANSHDGKLVIVRGTVEAKSAVDGSWKSLRPGVLVSPESGDKAVILQRTETCIYNEWKGLVGWTSDLRAIFSRSGRHGESTSLRKYFNQILTVVLEVLDDSDSSVRELALSLIVEMLKNRFLLLFKDAMENSVEIVIEKLLHVTKDIIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVICINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKAIDVTND

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	387994	405029	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005488 binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005348.1	PF02985.17	HEAT	160	186	8.70E-07
Glyur000054s00005348.1	PF12348.3	CLASP_N	317	476	1.10E-43
Glyur000054s00005348.1	PF12348.3	CLASP_N	780	973	1.40E-10
Glyur000054s00005348.2	PF12348.3	CLASP_N	282	475	7.90E-11
Glyur000054s00005348.3	PF02985.17	HEAT	160	186	2.20E-07
Glyur000054s00005348.3	PF12348.3	CLASP_N	317	475	6.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.995
SRR1783600	control	13.651
SRR1783602	moderate drought stress	15.308
SRR1811619	moderate drought stress	15.045

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.955
DRR006520	Root Summer glycyrrhizin high producing strain	13.716
DRR006521	Root Winter glycyrrhizin high producing strain	13.040
DRR006522	Root Winter glycyrrhizin high producing strain	12.642
DRR006523	Root Summer glycyrrhizin low producing strain	15.730
DRR006524	Root Summer glycyrrhizin low producing strain	15.881
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.449
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.330

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	32.063
SRR2868004	Drought Stress (root)	30.961
SRR2967015	Control (root)	36.169

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.333
SRR9715740	Leaf	17.151
SRR9715741	Leaf	20.319
SRR9715739	Root	6.677
SRR9715742	Root	25.519
SRR9715743	Root	21.734

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.860
SRR8749028	MeJA induced 9h	14.761
SRR8749029	MeJA induced 9h	10.321
SRR8749030	Uninduced	7.806
SRR8749031	Uninduced	7.493
SRR8749032	Uninduced	5.998

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.926
SRR8400027	Control - Root	36.743