Gene detail information of Glyur000054s00005347 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G20210.1 | 5.00E-126 | RNI-like superfamily protein |
| NR | XP_006604527.1 | 0 | PREDICTED: protein NLRC3-like [Glycine max] |
| trEMBL | tr|I1N9Y2|I1N9Y2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G35450.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00054 | 374749 | 382481 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000054s00005347.1 | PF13516.1 | LRR_6 | 383 | 403 | 1.9 |
| Glyur000054s00005347.1 | PF13516.1 | LRR_6 | 410 | 431 | 0.0014 |
| Glyur000054s00005347.2 | PF13516.1 | LRR_6 | 383 | 403 | 1.8 |
| Glyur000054s00005347.2 | PF13516.1 | LRR_6 | 410 | 431 | 0.0013 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.712 |
| SRR1783600 | control | 13.673 |
| SRR1783602 | moderate drought stress | 17.195 |
| SRR1811619 | moderate drought stress | 16.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.786 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.200 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.689 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.028 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.337 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.529 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.162 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.753 |
| SRR2868004 | Drought Stress (root) | 23.313 |
| SRR2967015 | Control (root) | 25.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.115 |
| SRR9715740 | Leaf | 15.177 |
| SRR9715741 | Leaf | 15.554 |
| SRR9715739 | Root | 10.673 |
| SRR9715742 | Root | 12.481 |
| SRR9715743 | Root | 14.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.634 |
| SRR8749028 | MeJA induced 9h | 6.887 |
| SRR8749029 | MeJA induced 9h | 3.082 |
| SRR8749030 | Uninduced | 3.270 |
| SRR8749031 | Uninduced | 1.360 |
| SRR8749032 | Uninduced | 1.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.719 |
| SRR8400027 | Control - Root | 27.791 |