Gene detail

Gene detail information of Glyur000054s00005345

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28760.2	4.00E-157	Protein of unknown function (DUF3741)
NR	XP_004493852.1	0	PREDICTED: uro-adherence factor A-like isoform X1 [Cicer arietinum]
trEMBL	tr\|I1N9Y1\|I1N9Y1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G35430.1}

Sequence

Transcript Sequence

>Glyur000054s00005345.1
CTTATGCAGAGCTTATGAACACAGCTTATGATTGATTCATAAGCTGTTTTGGGCTTATTTTTCATAAGCTACCCAGGATAGCTTATCAAAACAGCTTATGACTTATATAAAATAAGTTTCACTATAATTTTTCTTCGATTATAAAAGTAGCTTATACAACTTATGCCATAAGCAGTAGATAAATTGCACTATTAGAGATGCTCTTAGTTGTGTTGTGTGTGATTAAGCGTAACCCAAAACTGATGAATCAATAGCGGTTTGTGAGAAGAAAAAGCTTTTAAAGTCCGAGACACGCAGACGCAGCTAGCTAAGCGAACAACTCCACCACATAACATCACATCGCACCACCCTCTTTCTCCTTCTCTCTCTCCGAATGCCACCGTCGCCGTTCAGGTGTTTGAGATGAATGGGCTGCAGCAGAAGAACAGAAGGGTTCACAATGTGGAGAAGCCCTTCCCGGGATGCTTGGGAAGAATGGTTAACCTCTTTGATTTGACTGCTGCTGCTGGTGTCAACGGGAACAGGCTACTCACCGACAAGCCACACCGTGATGCATCTTCGCTTTCAAGAAGTCAATCGGATGTTTCAAGGATCGTGAGTCCTTCATTTGGCGATCGGACAGAGGATAAACTGATTGTTTCCGACTCGATGAGAGCATCTTCAAATAATAAAATAAATGGAACACCCATCAAGATGCTCATGGACCAAGAAATGTCCAAAGAAGTTGTTTCCAAGCACAGCCCACCGAATGTAGTTGCAAAACTAATGGGGCTTGAAGCCCTCCCCCGGGGAGAAGACAATTTAGCTGTGGACAGAAGCCATAGAGGAGATTATTCTCAACATATATGTGGTCATTCTGGGACACCGTTCAATCATTGGCAGCTGGAAGATAGGTTTATGGACAAGGAAATGCTTCATGAAGTTCATCCCAGCAGAGAACAGATTGCTTACAAAGATATTTATGAAATATGGCTGCAATCACAGAGAACTAGTAATGTAAAAGACAAGACACCAGAGAGAGAAAAGTGGACTGAAGATGTTAATGAGAAGAAAATGGCTCTCATTCGCCAGAAATTCATGGAAGCAAAGCGTCTGTCTACGGACGAGAGACTGCGCCAGTCCAAGGAGTTTGATGATGCCTTGGAAGTTTTAAGCTCCAATAATGATCTATTAATCAGGTTATTGGATTCTCAAAATCTTTACGAACTTCAGTCTACTCCACTAGCTGAGACAAAGCGTATTACTGTTCTTAAACCTTCCAAGATGGTTGACAATGAAAAATCCAGCAGAAATGGAAAGAACGACAAACATGCTAGGAAATCAGCAAATGTTGGTGCTGCATGGGAGAAAAATAGCCCTGGATACTCTCCAGGCAGTCAAAAAGTTGATGATTTTCCAGTTCAACCTACTCGAATAGTGGTATTGAAGCCTAGTTCTGTGAAGACACATGAGANTAAGGCTGTGGTTTCTCCAATGGCATCATCACCTCAAAATCTGCAGCAAAGTGGAAATTTTTATCAGGGCCCTGAAGATGATGATGCACTGGAATCAAGAAAAGTGGAAACAGAAATTACACAGCAAATGCATGAAAACCTGACGAGCTTTCAAAGAGATGAAACTTTGTATTCTTCAGTATATTCCAATGGCTATATTGGTGATGACAGTTCATTCAACAAATCAGATCATGAACATACTGCAGGGAATTTTAGTGATTTGGAAGTTATGTCACCATCTCCCAGGCATTCTTGGGATTACATCAATCGCTGTGGCAGTCCTTATTCTTCATCATCCTTCAGTCGTGCTTCCTGTTCTCCTGAGTCATCAGTATGCCGAGAGGCCAAGAAACGACTTTCTGAAAGATGGGCCATGATGGCATCTAATAAGGTTCTTCAAGAACAAAGGCATATGCGAAGAAGCTCTACCTTGGGTGAGATGCTTGCTCTTTCAGATCTAAAGAAATCTGTAATATCTGAGGTCGAAGGTATTAATAAGGAACAAGAACCAAGTGAATCTGATTCTTGCAGTCGAAATTTCAATGAAGAAATACATATGGATGATTCTCCTAAAAGCCTTAACAGGTCAAAATCTGTCCCTGTATCTTCCACTGTCTATGAAAATGGGCTCCACGTTGAAGCTTGTGATAATGATGCTGGTAAAGCACATGACTCCAAGGAGCTGACAAAGTCAAAGAGTATGAAATCATCATTTAAAGGGAAAGTTACTAGTTTCTTATTCTCAAGAAATAAGAAATCAATCAAGGAAAAATCTTGTCTATCTCAATCTACAGATGAGTCCCAATCAACTGTCGCTGAAACATCAGTATCTCCAATAAACTCACCTGAAGTCCTTAGGGATGATGTGTCTCAAAGCTTCAGTGGTGGCTTCTTTGGAGAGTTTTGTCTTCCAACTCTATATGAATCATCAAGTAAAACTTTATCCGATTCTGTTTCTAACAGACAAGGTGTACGTGTAATATCTCTGGAGCCTGAATTGAATGTGTCAAAGCCCATGGTACCAGGGATTTCATGTGAAAACCAGGATCAGCCGAGTCCAATCTCAGTTTTAGAACCTCCATTTGAAGATGATAATGCAGCTCATGAGTCTTTGGACTGTATGAAGGGTGGTCAGCTGGGATCACGGGTGTCTTTGAAGTCTAATTTAATTGACAAATCACCACCTATAGAGTCAATAGCTCGAACCCTCTCGTGGGATGATTCTCGTGCGGAGGTAGCAAGTCCGTACCCATTAAACCCTTCCTTGGACACCAAGGTAGAGGATCAAGACTTGCCCGTCTTCGTCGAAAAACTACTATCAGCTGCAGGACTTGATGATCAAGTGCAGTCTGACTCGTTTTACTCTAGATGGCATTCCCTTGAAAGTCCATTGGATCCATCATTGAGGGACAAATATGCCAATCTCAATGACAAGGAGCCTCAGCAGCCTCTCCATGAAGCCAAGCGAAGGCAGAGGAGATCTAATCAGAAGCTTGTATTCGATTGTGTAAATGTTGCACTTGTAGAAATTACTGGTTATGGATCAGAAAATTACTTGATGGGCAGGTTGAGGAGTGGGGGCCAAAGAAGGCTCCAAGTCCCAGAGGGTGCACCTCCCCTATTGGTGGACCTGATTGTGGCCCAAATGAAGGATTTGGTATCTAGTGGGATGAGGTCTGTTTGGGGGGATTGTGGGGACAGTAACAGCCTGGTGGTGGAGAGTGTTGTCAGAAAAGAGGTTGTGGGGAAAGAGTGGGTTGAGCTTATGGGGTTAGAGATGGATATTTTGGTGAAGGAAGTAGAGGGGAGGTTGCTAGAAGAACTCGTGGAGGATGCGGTAGTTGATTTGACAGGCAGGGCCTGAATGGTTGAATCCCTAATGTGGCTTTCTGCTTTGTTTTTTTATTTTCAATTTTCAATATTGTAACTCTATTATTGCTGTATTCGATAATCAACACATGGCCCTACTTACCTAATTTATTAAATGCTACTAAAGGTGTTCCAATTTGTAGTTATTAGTGTTTCAATTTGTAGA

Protein Sequence

>Glyur000054s00005345.1
MNGLQQKNRRVHNVEKPFPGCLGRMVNLFDLTAAAGVNGNRLLTDKPHRDASSLSRSQSDVSRIVSPSFGDRTEDKLIVSDSMRASSNNKINGTPIKMLMDQEMSKEVVSKHSPPNVVAKLMGLEALPRGEDNLAVDRSHRGDYSQHICGHSGTPFNHWQLEDRFMDKEMLHEVHPSREQIAYKDIYEIWLQSQRTSNVKDKTPEREKWTEDVNEKKMALIRQKFMEAKRLSTDERLRQSKEFDDALEVLSSNNDLLIRLLDSQNLYELQSTPLAETKRITVLKPSKMVDNEKSSRNGKNDKHARKSANVGAAWEKNSPGYSPGSQKVDDFPVQPTRIVVLKPSSVKTHEXKAVVSPMASSPQNLQQSGNFYQGPEDDDALESRKVETEITQQMHENLTSFQRDETLYSSVYSNGYIGDDSSFNKSDHEHTAGNFSDLEVMSPSPRHSWDYINRCGSPYSSSSFSRASCSPESSVCREAKKRLSERWAMMASNKVLQEQRHMRRSSTLGEMLALSDLKKSVISEVEGINKEQEPSESDSCSRNFNEEIHMDDSPKSLNRSKSVPVSSTVYENGLHVEACDNDAGKAHDSKELTKSKSMKSSFKGKVTSFLFSRNKKSIKEKSCLSQSTDESQSTVAETSVSPINSPEVLRDDVSQSFSGGFFGEFCLPTLYESSSKTLSDSVSNRQGVRVISLEPELNVSKPMVPGISCENQDQPSPISVLEPPFEDDNAAHESLDCMKGGQLGSRVSLKSNLIDKSPPIESIARTLSWDDSRAEVASPYPLNPSLDTKVEDQDLPVFVEKLLSAAGLDDQVQSDSFYSRWHSLESPLDPSLRDKYANLNDKEPQQPLHEAKRRQRRSNQKLVFDCVNVALVEITGYGSENYLMGRLRSGGQRRLQVPEGAPPLLVDLIVAQMKDLVSSGMRSVWGDCGDSNSLVVESVVRKEVVGKEWVELMGLEMDILVKEVEGRLLEELVEDAVVDLTGRA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00054	363478	369214	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000054s00005345.1	PF12552.3	DUF3741	221	264	4.90E-17
Glyur000054s00005345.1	PF14309.1	DUF4378	798	975	7.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	35.990
SRR1783600	control	36.123
SRR1783602	moderate drought stress	20.121
SRR1811619	moderate drought stress	20.155

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.958
DRR006520	Root Summer glycyrrhizin high producing strain	19.865
DRR006521	Root Winter glycyrrhizin high producing strain	11.821
DRR006522	Root Winter glycyrrhizin high producing strain	11.464
DRR006523	Root Summer glycyrrhizin low producing strain	16.720
DRR006524	Root Summer glycyrrhizin low producing strain	16.906
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.998
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.871

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.362
SRR2868004	Drought Stress (root)	37.712
SRR2967015	Control (root)	43.763

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.132
SRR9715740	Leaf	12.643
SRR9715741	Leaf	12.806
SRR9715739	Root	4.387
SRR9715742	Root	18.804
SRR9715743	Root	15.167

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.465
SRR8749028	MeJA induced 9h	29.726
SRR8749029	MeJA induced 9h	17.545
SRR8749030	Uninduced	6.055
SRR8749031	Uninduced	3.769
SRR8749032	Uninduced	4.753

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	55.220
SRR8400027	Control - Root	56.873